Factsheet for HORVU6Hr1G085370.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
MultiLoc:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU5Hr1G045920.2

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G07920.1	HORVU5Hr1G045920.2	AT3G54220.1	19228333
AT1G07930.1	HORVU5Hr1G045920.2	AT3G54220.1	19228333

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU6Hr1G085320.3	Barley	cytosol	96.68	99.09
HORVU5Hr1G051280.1	Barley	cytosol	21.9	95.19
HORVU4Hr1G056830.1	Barley	cytosol	59.73	92.15
HORVU4Hr1G056740.1	Barley	cytosol	90.71	91.72
TraesCS5B01G418100.1	Wheat	cytosol	90.71	91.72
TraesCS5B01G418200.1	Wheat	cytosol	90.71	91.72
TraesCS5D01G423300.1	Wheat	cytosol	90.71	91.72
TraesCS5D01G423400.1	Wheat	cytosol	90.71	91.72
GSMUA_Achr5P24440_001	Banana	cytosol	25.66	91.34
TraesCS5A01G415400.1	Wheat	cytosol	90.04	91.05
TraesCS5A01G415600.1	Wheat	cytosol	90.04	91.05
CDY09214	Canola	cytosol	31.86	90.0
HORVU0Hr1G017020.1	Barley	cytosol	88.5	89.49
HORVU2Hr1G013680.1	Barley	cytosol, plasma membrane	88.5	89.49
KRH07098	Soybean	cytosol, mitochondrion, nucleus	88.5	89.49
KRG93959	Soybean	nucleus	88.27	89.26
Os03t0177400-01	Rice	cytosol	88.27	89.26
Os03t0177500-01	Rice	cytosol	88.27	89.26
Os03t0177900-01	Rice	plasma membrane	88.27	89.26
Os03t0178000-02	Rice	cytosol	88.27	89.26
KRH58241	Soybean	nucleus	88.05	89.04
Zm00001d046449_P003	Maize	cytosol	88.05	89.04
Zm00001d037875_P014	Maize	cytosol	88.72	88.91
Zm00001d037877_P014	Maize	cytosol	88.72	88.91
Zm00001d037873_P010	Maize	cytosol	88.5	88.69
KXG20293	Sorghum	cytosol	87.61	88.59
KXG20294	Sorghum	cytosol	87.61	88.59
KXG20296	Sorghum	cytosol	87.61	88.59
KXG20299	Sorghum	cytosol	87.61	88.59
VIT_06s0004g03240.t01	Wine grape	cytosol	87.61	88.59
Zm00001d009870_P008	Maize	cytosol	88.27	88.47
Zm00001d036904_P001	Maize	cytosol	87.39	88.37
HORVU5Hr1G100200.3	Barley	mitochondrion	90.71	88.36
GSMUA_Achr10P...	Banana	cytosol	55.09	88.3
HORVU5Hr1G100700.3	Barley	plasma membrane	90.71	88.17
KRH34904	Soybean	nucleus	87.39	88.17
PGSC0003DMT400020968	Potato	cytosol	87.17	88.14
PGSC0003DMT400050663	Potato	cytosol	87.17	88.14
Solyc11g069700.1.1	Tomato	nucleus	87.17	88.14
VIT_08s0040g02330.t01	Wine grape	cytosol	87.17	88.14
CDY67375	Canola	cytosol	54.2	88.13
CDY06287	Canola	cytosol	44.25	88.11
Zm00001d009868_P015	Maize	cytosol	87.83	88.03
Zm00001d037905_P010	Maize	cytosol	87.83	88.03
KRH57863	Soybean	nucleus	86.95	87.92
GSMUA_Achr6P04090_001	Banana	cytosol	38.27	87.82
GSMUA_Achr10P...	Banana	cytosol	54.2	87.81
PGSC0003DMT400053547	Potato	cytosol	86.95	87.72
PGSC0003DMT400053553	Potato	cytosol	86.95	87.72
PGSC0003DMT400059830	Potato	cytosol	86.95	87.72
PGSC0003DMT400059832	Potato	cytosol	86.95	87.72
Solyc06g005060.2.1	Tomato	cytosol	86.95	87.72
Solyc06g009970.2.1	Tomato	extracellular, nucleus, plastid	86.95	87.72
KRH04781	Soybean	endoplasmic reticulum	86.73	87.7
Zm00001d037882_P001	Maize	cytosol	35.84	87.57
CDY06289	Canola	cytosol	49.34	87.11
AT1G07920.1	Thale cress	cytosol	86.5	87.08
AT1G07930.1	Thale cress	cytosol	86.5	87.08
AT1G07940.3	Thale cress	cytosol	86.5	87.08
AT5G60390.2	Thale cress	cytosol	86.5	87.08
Bra031601.1-P	Field mustard	cytosol	38.05	86.87
VIT_13s0019g03920.t01	Wine grape	cytosol	87.17	86.59
Solyc06g009960.1.1	Tomato	cytosol	78.54	86.59
Bra002483.1-P	Field mustard	cytosol	85.84	86.41
Bra018669.1-P	Field mustard	cytosol	85.84	86.41
Bra020253.1-P	Field mustard	cytosol	85.84	86.41
Bra031602.1-P	Field mustard	cytosol	85.84	86.41
Bra018242.1-P	Field mustard	cytosol	85.62	86.19
CDY09211	Canola	cytosol	81.19	85.75
CDY10804	Canola	cytosol	81.19	85.75
CDY34479	Canola	cytosol	81.19	85.75
CDY61938	Canola	cytosol	81.19	85.75
Bra006661.1-P	Field mustard	cytosol	85.18	85.75
HORVU4Hr1G056820.1	Barley	plasma membrane	90.27	85.71
Bra020251.1-P	Field mustard	cytosol	78.1	85.68
Bra031605.1-P	Field mustard	cytosol	80.75	85.48
CDY22710	Canola	cytosol	80.75	85.48
CDY22711	Canola	cytosol	80.75	85.48
CDX88757	Canola	cytosol	75.66	85.29
GSMUA_Achr3P17840_001	Banana	cytosol	28.32	84.21
GSMUA_AchrUn_...	Banana	cytosol	38.5	83.25
OQU75582	Sorghum	cytosol	23.01	83.2
GSMUA_Achr2P19000_001	Banana	cytosol	13.94	81.82
Zm00001d009887_P001	Maize	cytosol	26.11	80.82
GSMUA_Achr7P15510_001	Banana	cytosol, plasma membrane	72.79	80.64
CDX70032	Canola	cytosol	61.06	80.23
CDX93604	Canola	cytosol	81.19	79.78
CDX95108	Canola	cytosol, extracellular	85.84	79.67
OQU75597	Sorghum	cytosol	29.87	77.14
VIT_06s0004g03220.t01	Wine grape	cytosol	87.61	76.45
CDY06288	Canola	cytosol	19.25	75.65
CDY06290	Canola	cytosol	19.25	75.65
CDY67376	Canola	cytosol	19.25	75.65
CDY69678	Canola	cytosol	19.25	75.65
VIT_19s0014g04110.t01	Wine grape	cytosol	19.69	73.55
GSMUA_Achr10P...	Banana	cytosol, plastid	34.96	73.49
Bra030707.1-P	Field mustard	cytosol	85.84	65.76
CDY58828	Canola	cytosol	80.75	64.26
GSMUA_Achr6P02020_001	Banana	mitochondrion	48.23	63.01
HORVU2Hr1G012860.1	Barley	cytosol	33.63	31.21
HORVU5Hr1G122350.1	Barley	cytosol	19.69	28.99
HORVU3Hr1G020770.1	Barley	cytosol	9.96	28.48
HORVU0Hr1G026370.1	Barley	mitochondrion	10.84	22.17
HORVU2Hr1G079480.2	Barley	cytosol, plastid	12.61	21.43
HORVU6Hr1G053680.5	Barley	plastid	23.01	20.23
HORVU2Hr1G119310.19	Barley	cytosol	30.75	20.17
HORVU2Hr1G040960.1	Barley	mitochondrion	10.62	20.08
HORVU2Hr1G102800.6	Barley	cytosol, plastid	32.74	19.6
HORVU2Hr1G040970.1	Barley	mitochondrion	10.84	10.82

Protein Annotations

MapMan:17.5.1.1	Gene3D:2.40.30.10	Gene3D:3.40.50.300	UniProt:A0A287V0N0	InterPro:EFTu-like_2	GO:GO:0000166
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003746	GO:GO:0003824	GO:GO:0003924
GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006412	GO:GO:0006414	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	InterPro:G_TR_CS	EnsemblPlantsGene:HORVU6Hr1G085370	EnsemblPlants:HORVU6Hr1G085370.1
InterPro:IPR000795	InterPro:P-loop_NTPase	PFAM:PF00009	PFAM:PF03143	PFAM:PF03144	PRINTS:PR00315
ScanProsite:PS00301	PFscan:PS51722	PANTHER:PTHR23115	PANTHER:PTHR23115:SF230	SUPFAM:SSF50447	SUPFAM:SSF50465
SUPFAM:SSF52540	InterPro:TF_GTP-bd_dom	TIGRFAMs:TIGR00483	InterPro:Transl_B-barrel_sf	InterPro:Transl_elong_EF1A/Init_IF2_C	InterPro:Transl_elong_EF1A_euk/arc
InterPro:Transl_elong_EFTu/EF1A_C	UniParc:UPI000B466623	SEG:seg	:	:	:

Description

Elongation factor 1-alpha [Source:UniProtKB/TrEMBL;Acc:A0A287V0N0]

Coordinates

chrchr6H:-:558394485..558396897

Molecular Weight (calculated)

49592.5 Da

IEP (calculated)

9.512

GRAVY (calculated)

-0.223

Length

452 amino acids

Sequence
(BLAST)

001: ISKQKARMNI VVIGHVNSGK STTTGHLIYK LGGIDETVIQ CLEKEAAEMN KRSFKYAWVL DKLKAERERG ITIDIALWKF ETTKYYCTVI DAPGHRDFIK
101: NMITGTSQAD CAVLIIDSTK GGFEAGISKD GQTREHSLLA FVLGVKQMIC CCNKMDATAP KYSKTRYEEI VKEVSSYLKK VGYNPDKVPF VPISGFEGDN
201: MIERSTNLNW YKGPTLVEAL DQINEPKRPS DKPLRLPLQD VYKIGGIGTV PVGRVETGVI KPGMVVAFGP TGLTTEVKSV EMHHEPLLEA LPGDIVGFNV
301: ENVAVKDLKR GFVASNSKDD PAKEAANFTS QVIIMNHPGH ISNGYAPVLD CHTSHIAVKF AELVTKIDRR SGKELEALPK FLKKGDAGIV KMIPTKPMVV
401: ETFAAYPPLG RFAVRDMRQT VAVGVIKGVE KKEVTKKLAK GQKGPCVATG EK

Best Arabidopsis Sequence Match ( AT1G07930.1 )
(BLAST)

001: MGKEKFHINI VVIGHVDSGK STTTGHLIYK LGGIDKRVIE RFEKEAAEMN KRSFKYAWVL DKLKAERERG ITIDIALWKF ETTKYYCTVI DAPGHRDFIK
101: NMITGTSQAD CAVLIIDSTT GGFEAGISKD GQTREHALLA FTLGVKQMIC CCNKMDATTP KYSKARYDEI IKEVSSYLKK VGYNPDKIPF VPISGFEGDN
201: MIERSTNLDW YKGPTLLEAL DQINEPKRPS DKPLRLPLQD VYKIGGIGTV PVGRVETGMI KPGMVVTFAP TGLTTEVKSV EMHHESLLEA LPGDNVGFNV
301: KNVAVKDLKR GYVASNSKDD PAKGAANFTS QVIIMNHPGQ IGNGYAPVLD CHTSHIAVKF SEILTKIDRR SGKEIEKEPK FLKNGDAGMV KMTPTKPMVV
401: ETFSEYPPLG RFAVRDMRQT VAVGVIKSVD KKDPTGAKVT KAAVKKGAK

Arabidopsis Description

A1Elongation factor 1-alpha 4 [Source:UniProtKB/Swiss-Prot;Acc:Q8GTY0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.