Factsheet for HORVU4Hr1G056830.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
MultiLoc:	cytosol
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU5Hr1G045920.2

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G07920.1	HORVU5Hr1G045920.2	AT3G54220.1	19228333
AT1G07930.1	HORVU5Hr1G045920.2	AT3G54220.1	19228333

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P04090_001	Banana	cytosol	59.39	88.32
CDY06288	Canola	cytosol	33.79	86.09
CDY06290	Canola	cytosol	33.79	86.09
CDY67376	Canola	cytosol	33.79	86.09
CDY69678	Canola	cytosol	33.79	86.09
CDX70032	Canola	cytosol	91.47	77.91
GSMUA_Achr10P...	Banana	cytosol	73.38	76.24
GSMUA_Achr10P...	Banana	cytosol	72.35	75.99
HORVU4Hr1G056740.1	Barley	cytosol	99.66	65.32
TraesCS4B01G196900.1	Wheat	golgi	99.66	65.32
TraesCS4D01G197100.1	Wheat	cytosol	99.66	65.32
TraesCS4D01G197200.1	Wheat	cytosol	99.66	65.32
Bra020251.1-P	Field mustard	cytosol	91.13	64.81
TraesCS4A01G107600.1	Wheat	cytosol	98.63	64.65
TraesCS4A01G107700.1	Wheat	cytosol	98.63	64.65
HORVU5Hr1G100200.3	Barley	mitochondrion	99.66	62.93
HORVU0Hr1G017020.1	Barley	cytosol	95.9	62.86
HORVU2Hr1G013680.1	Barley	cytosol, plasma membrane	95.9	62.86
HORVU5Hr1G100700.3	Barley	plasma membrane	99.66	62.8
Bra031605.1-P	Field mustard	cytosol	91.47	62.76
CDY22710	Canola	cytosol	91.47	62.76
CDY22711	Canola	cytosol	91.47	62.76
GSMUA_AchrUn_...	Banana	cytosol	44.71	62.68
CDY09211	Canola	cytosol	91.47	62.62
CDY10804	Canola	cytosol	91.47	62.62
CDY34479	Canola	cytosol	91.47	62.62
CDY61938	Canola	cytosol	91.47	62.62
KRH07098	Soybean	cytosol, mitochondrion, nucleus	95.22	62.42
Solyc06g009960.1.1	Tomato	cytosol	87.03	62.2
KRG93959	Soybean	nucleus	94.54	61.97
Os03t0177400-01	Rice	cytosol	94.54	61.97
Os03t0177500-01	Rice	cytosol	94.54	61.97
Os03t0177900-01	Rice	plasma membrane	94.54	61.97
Os03t0178000-02	Rice	cytosol	94.54	61.97
HORVU6Hr1G085320.3	Barley	cytosol	93.17	61.9
KRH04781	Soybean	endoplasmic reticulum	94.2	61.74
KRH57863	Soybean	nucleus	94.2	61.74
KRH58241	Soybean	nucleus	94.2	61.74
PGSC0003DMT400020968	Potato	cytosol	94.2	61.74
Zm00001d046449_P003	Maize	cytosol	94.2	61.74
Zm00001d037875_P014	Maize	cytosol	94.88	61.64
Zm00001d037877_P014	Maize	cytosol	94.88	61.64
HORVU4Hr1G056820.1	Barley	plasma membrane	100.0	61.55
PGSC0003DMT400050663	Potato	cytosol	93.86	61.52
Solyc11g069700.1.1	Tomato	nucleus	93.86	61.52
Zm00001d009870_P008	Maize	cytosol	94.54	61.42
Zm00001d037873_P010	Maize	cytosol	94.54	61.42
Zm00001d037905_P010	Maize	cytosol	94.54	61.42
KRH34904	Soybean	nucleus	93.86	61.38
PGSC0003DMT400053547	Potato	cytosol	93.86	61.38
PGSC0003DMT400053553	Potato	cytosol	93.86	61.38
PGSC0003DMT400059830	Potato	cytosol	93.86	61.38
PGSC0003DMT400059832	Potato	cytosol	93.86	61.38
Solyc06g005060.2.1	Tomato	cytosol	93.86	61.38
Solyc06g009970.2.1	Tomato	extracellular, nucleus, plastid	93.86	61.38
KXG20293	Sorghum	cytosol	93.52	61.3
KXG20294	Sorghum	cytosol	93.52	61.3
KXG20296	Sorghum	cytosol	93.52	61.3
KXG20299	Sorghum	cytosol	93.52	61.3
VIT_06s0004g03240.t01	Wine grape	cytosol	93.52	61.3
VIT_08s0040g02330.t01	Wine grape	cytosol	93.17	61.07
Zm00001d036904_P001	Maize	cytosol	93.17	61.07
Zm00001d009868_P015	Maize	cytosol	93.86	60.98
CDX88757	Canola	cytosol	83.28	60.85
TraesCS4B01G196800.2	Wheat	golgi	99.66	60.46
AT1G07920.1	Thale cress	cytosol	92.49	60.36
AT1G07930.1	Thale cress	cytosol	92.49	60.36
AT1G07940.3	Thale cress	cytosol	92.49	60.36
AT5G60390.2	Thale cress	cytosol	92.49	60.36
VIT_13s0019g03920.t01	Wine grape	cytosol	92.83	59.78
HORVU6Hr1G085370.1	Barley	cytosol	92.15	59.73
Bra002483.1-P	Field mustard	cytosol	91.47	59.69
Bra018669.1-P	Field mustard	cytosol	91.47	59.69
Bra020253.1-P	Field mustard	cytosol	91.47	59.69
Bra031602.1-P	Field mustard	cytosol	91.47	59.69
Bra018242.1-P	Field mustard	cytosol	91.13	59.47
Bra006661.1-P	Field mustard	cytosol	90.1	58.8
CDX93604	Canola	cytosol	91.47	58.26
CDX95108	Canola	cytosol, extracellular	91.47	55.03
GSMUA_Achr7P15510_001	Banana	cytosol, plasma membrane	76.45	54.9
GSMUA_Achr3P17840_001	Banana	cytosol	27.99	53.95
VIT_06s0004g03220.t01	Wine grape	cytosol	93.52	52.9
CDY67375	Canola	cytosol	45.39	47.84
CDY58828	Canola	cytosol	91.47	47.18
Bra030707.1-P	Field mustard	cytosol	91.47	45.42
CDY06289	Canola	cytosol	37.54	42.97
CDY06287	Canola	cytosol	29.35	37.89
GSMUA_Achr6P02020_001	Banana	mitochondrion	28.33	23.99
HORVU5Hr1G122350.1	Barley	cytosol	24.23	23.13
HORVU2Hr1G012860.1	Barley	cytosol	31.4	18.89
Bra031601.1-P	Field mustard	cytosol	12.29	18.18
Zm00001d037882_P001	Maize	cytosol	9.56	15.14
HORVU6Hr1G053680.5	Barley	plastid	24.23	13.81
HORVU2Hr1G102800.6	Barley	cytosol, plastid	27.3	10.6
HORVU2Hr1G119310.19	Barley	cytosol	24.23	10.3
GSMUA_Achr10P...	Banana	cytosol, plastid	7.51	10.23
GSMUA_Achr5P24440_001	Banana	cytosol	2.73	6.3
HORVU2Hr1G079480.2	Barley	cytosol, plastid	4.44	4.89
OQU75597	Sorghum	cytosol	2.39	4.0
HORVU3Hr1G020770.1	Barley	cytosol	1.71	3.16
CDY09214	Canola	cytosol	1.71	3.12
HORVU0Hr1G026370.1	Barley	mitochondrion	1.71	2.26
HORVU2Hr1G040960.1	Barley	mitochondrion	1.37	1.67
HORVU2Hr1G040970.1	Barley	mitochondrion	1.71	1.1
GSMUA_Achr2P19000_001	Banana	cytosol	0.0	0.0
HORVU5Hr1G051280.1	Barley	cytosol	0.0	0.0
OQU75582	Sorghum	cytosol	0.0	0.0
VIT_19s0014g04110.t01	Wine grape	cytosol	0.0	0.0
Zm00001d009887_P001	Maize	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:HORVU4Hr1G056830.1	EnsemblPlantsGene:HORVU4Hr1G056830	Gene3D:2.40.30.10	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674
GO:GO:0005488	GO:GO:0005525	InterPro:EFTu-like_2	InterPro:P-loop_NTPase	InterPro:Transl_B-barrel_sf	InterPro:Transl_elong_EF1A/Init_IF2_C
InterPro:Transl_elong_EFTu/EF1A_C	PANTHER:PTHR23115	PANTHER:PTHR23115:SF230	PFAM:PF03143	PFAM:PF03144	SUPFAM:SSF50447
SUPFAM:SSF50465	SUPFAM:SSF52540	UniParc:UPI000B484AE6	UniProt:A0A287P692	MapMan:17.5.1.1	:

Description

No Description!

Coordinates

chrchr4H:-:477290633..477291533

Molecular Weight (calculated)

31970.9 Da

IEP (calculated)

9.932

GRAVY (calculated)

-0.294

Length

293 amino acids

Sequence
(BLAST)

001: MDATTPKYSK ARYEEIVKEV SSYLKKVGYN PDKVPFVPIS GFEGDNMIER STNLDWYKGP TLLEALDQIN EPKRPSDKPL RLPLQDVYKI GGIGTVPVGR
101: VETGVIKPGM VVTFGPTGLT TEVKSVEMHH ESLLEALPGD NVGFNVKNVA VKDLKRGFVA SNSKDDPAKE AANFTAQVII MNHPGQIGNG YAPVLDCHTS
201: HIAVKFAELV TKIDRRSGKE LEALPKFLKN GDAGIVKMIP TKPMVVETFA TYPPLGRFAV RDMRQTVAVG VIKGVEKKDP TGAKVTKAAI KKK

Best Arabidopsis Sequence Match ( AT1G07930.1 )
(BLAST)

001: MGKEKFHINI VVIGHVDSGK STTTGHLIYK LGGIDKRVIE RFEKEAAEMN KRSFKYAWVL DKLKAERERG ITIDIALWKF ETTKYYCTVI DAPGHRDFIK
101: NMITGTSQAD CAVLIIDSTT GGFEAGISKD GQTREHALLA FTLGVKQMIC CCNKMDATTP KYSKARYDEI IKEVSSYLKK VGYNPDKIPF VPISGFEGDN
201: MIERSTNLDW YKGPTLLEAL DQINEPKRPS DKPLRLPLQD VYKIGGIGTV PVGRVETGMI KPGMVVTFAP TGLTTEVKSV EMHHESLLEA LPGDNVGFNV
301: KNVAVKDLKR GYVASNSKDD PAKGAANFTS QVIIMNHPGQ IGNGYAPVLD CHTSHIAVKF SEILTKIDRR SGKEIEKEPK FLKNGDAGMV KMTPTKPMVV
401: ETFSEYPPLG RFAVRDMRQT VAVGVIKSVD KKDPTGAKVT KAAVKKGAK

Arabidopsis Description

A1Elongation factor 1-alpha 4 [Source:UniProtKB/Swiss-Prot;Acc:Q8GTY0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.