Factsheet for VIT_06s0004g03220.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
vacuole 1
nucleus 1
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_08s0056g00050.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G07920.1	VIT_08s0056g00050.t01	AT3G54220.1	19228333
AT1G07930.1	VIT_08s0056g00050.t01	AT3G54220.1	19228333

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_06s0004g03240.t01	Wine grape	cytosol	86.29	100.0
CDY09214	Canola	cytosol	30.31	98.12
VIT_08s0040g02330.t01	Wine grape	cytosol	84.17	97.54
GSMUA_Achr2P19000_001	Banana	cytosol	14.48	97.4
KRG93959	Soybean	nucleus	83.98	97.32
KRH58241	Soybean	nucleus	83.98	97.32
HORVU5Hr1G051280.1	Barley	cytosol	19.5	97.12
Os03t0178000-02	Rice	cytosol	83.59	96.87
Os03t0177900-01	Rice	plasma membrane	83.59	96.87
Os03t0177500-01	Rice	cytosol	83.59	96.87
Os03t0177400-01	Rice	cytosol	83.59	96.87
KRH07098	Soybean	cytosol, mitochondrion, nucleus	83.4	96.64
KRH34904	Soybean	nucleus	83.2	96.21
KXG20296	Sorghum	cytosol	83.01	96.2
KXG20293	Sorghum	cytosol	83.01	96.2
KXG20294	Sorghum	cytosol	83.01	96.2
KXG20299	Sorghum	cytosol	83.01	96.2
Zm00001d036904_P001	Maize	cytosol	83.01	96.2
Zm00001d046449_P003	Maize	cytosol	82.82	95.97
Bra031601.1-P	Field mustard	cytosol	36.68	95.96
VIT_13s0019g03920.t01	Wine grape	cytosol	84.17	95.82
KRH57863	Soybean	nucleus	82.63	95.75
KRH04781	Soybean	endoplasmic reticulum	82.63	95.75
CDY67375	Canola	cytosol	51.35	95.68
Zm00001d037882_P001	Maize	cytosol	34.17	95.68
CDY06287	Canola	cytosol	41.89	95.59
TraesCS4B01G196900.1	Wheat	golgi	82.43	95.53
TraesCS5B01G418100.1	Wheat	cytosol	82.43	95.53
TraesCS5B01G418200.1	Wheat	cytosol	82.43	95.53
HORVU4Hr1G056740.1	Barley	cytosol	82.43	95.53
Zm00001d009870_P008	Maize	cytosol	83.01	95.34
Zm00001d037873_P010	Maize	cytosol	83.01	95.34
Bra002483.1-P	Field mustard	cytosol	82.63	95.32
Bra031602.1-P	Field mustard	cytosol	82.63	95.32
Bra018669.1-P	Field mustard	cytosol	82.63	95.32
CDX88757	Canola	cytosol	73.75	95.26
Zm00001d037877_P014	Maize	cytosol	82.82	95.12
Zm00001d037875_P014	Maize	cytosol	82.82	95.12
Bra020253.1-P	Field mustard	cytosol	82.43	95.1
Bra018242.1-P	Field mustard	cytosol	82.43	95.1
CDY34479	Canola	cytosol	78.57	95.09
CDY10804	Canola	cytosol	78.57	95.09
CDY61938	Canola	cytosol	78.57	95.09
CDY09211	Canola	cytosol	78.57	95.09
CDY22711	Canola	cytosol	78.38	95.08
CDY22710	Canola	cytosol	78.38	95.08
Bra031605.1-P	Field mustard	cytosol	78.38	95.08
TraesCS4A01G107600.1	Wheat	cytosol	82.05	95.08
TraesCS4A01G107700.1	Wheat	cytosol	82.05	95.08
TraesCS5A01G415600.1	Wheat	cytosol	82.05	95.08
TraesCS5A01G415400.1	Wheat	cytosol	82.05	95.08
Zm00001d037905_P010	Maize	cytosol	82.63	94.9
Zm00001d009868_P015	Maize	cytosol	82.63	94.9
AT5G60390.2	Thale cress	cytosol	82.24	94.88
AT1G07940.3	Thale cress	cytosol	82.24	94.88
AT1G07930.1	Thale cress	cytosol	82.24	94.88
AT1G07920.1	Thale cress	cytosol	82.24	94.88
CDY06289	Canola	cytosol	46.72	94.53
Bra006661.1-P	Field mustard	cytosol	81.85	94.43
Bra020251.1-P	Field mustard	cytosol	75.1	94.42
HORVU4Hr1G056830.1	Barley	cytosol	52.9	93.52
HORVU5Hr1G100700.3	Barley	plasma membrane	82.63	92.04
HORVU5Hr1G100200.3	Barley	mitochondrion	82.43	92.03
OQU75582	Sorghum	cytosol	22.2	92.0
CDY06288	Canola	cytosol	20.08	90.43
CDY06290	Canola	cytosol	20.08	90.43
CDY67376	Canola	cytosol	20.08	90.43
CDY69678	Canola	cytosol	20.08	90.43
HORVU4Hr1G056820.1	Barley	plasma membrane	82.63	89.92
HORVU6Hr1G085320.3	Barley	cytosol	76.45	89.8
Zm00001d009887_P001	Maize	cytosol	25.1	89.04
CDX70032	Canola	cytosol	58.88	88.66
CDX93604	Canola	cytosol	78.57	88.48
TraesCS4B01G196800.2	Wheat	golgi	82.43	88.41
CDX95108	Canola	cytosol, extracellular	82.63	87.89
HORVU6Hr1G085370.1	Barley	cytosol	76.45	87.61
OQU75597	Sorghum	cytosol	28.76	85.14
VIT_19s0014g04110.t01	Wine grape	cytosol	18.92	80.99
Bra030707.1-P	Field mustard	cytosol	82.63	72.54
CDY58828	Canola	cytosol	78.38	71.48
TraesCS2D01G323300.1	Wheat	cytosol, mitochondrion	13.9	67.92
VIT_17s0000g02860.t01	Wine grape	plastid	31.27	31.21
VIT_05s0029g00030.t01	Wine grape	cytosol	7.14	28.24
VIT_07s0104g00600.t01	Wine grape	mitochondrion	23.94	27.62
VIT_14s0066g00220.t01	Wine grape	plastid	25.87	27.52
VIT_17s0000g09140.t01	Wine grape	cytosol	8.49	27.5
VIT_17s0000g09370.t01	Wine grape	plastid	25.48	27.16
VIT_03s0017g00530.t01	Wine grape	cytosol	31.27	21.32
VIT_12s0034g01800.t01	Wine grape	cytosol	7.34	10.3

Protein Annotations

EntrezGene:100246711	wikigene:100246711	EntrezGene:100256979	wikigene:100256979	MapMan:17.5.1.1	Gene3D:2.40.30.10
Gene3D:3.40.50.300	EMBL:AM425620	ProteinID:CAN64511	ProteinID:CAN64511.1	ProteinID:CCB43650	ProteinID:CCB43650.1
ProteinID:CCB43652	ProteinID:CCB43652.1	InterPro:EFTu-like_2	UniProt:F6GTY8	EMBL:FN594951	GO:GO:0000166
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003746	GO:GO:0003824	GO:GO:0003924
GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006412	GO:GO:0006414	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	InterPro:G_TR_CS	InterPro:IPR000795	EntrezGene:LOC100246711
wikigene:LOC100246711	EntrezGene:LOC100256979	wikigene:LOC100256979	HAMAP:MF_00118_A	InterPro:P-loop_NTPase	PFAM:PF00009
PFAM:PF02238	PFAM:PF03143	PFAM:PF03144	PRINTS:PR00315	ScanProsite:PS00301	PFscan:PS51722
PANTHER:PTHR23115	PANTHER:PTHR23115:SF230	SUPFAM:SSF50447	SUPFAM:SSF50465	SUPFAM:SSF52540	TIGR:TC52678
InterPro:TF_GTP-bd_dom	TIGRFAMs:TIGR00483	InterPro:Transl_B-barrel_sf	InterPro:Transl_elong_EF1A/Init_IF2_C	InterPro:Transl_elong_EF1A_euk/arc	InterPro:Transl_elong_EFTu/EF1A_C
UniParc:UPI000210A5FE	ArrayExpress:VIT_06s0004g03220	EnsemblPlantsGene:VIT_06s0004g03220	EnsemblPlants:VIT_06s0004g03220.t01	RefSeq:XP_002282163	RefSeq:XP_002282163.2
RefSeq:XP_002284924	RefSeq:XP_002284924.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr6:-:3983937..4000554

Molecular Weight (calculated)

57372.8 Da

IEP (calculated)

9.740

GRAVY (calculated)

-0.314

Length

518 amino acids

Sequence
(BLAST)

001: MDPLLNVKME DKGLRNMTEP PFVPREKLLE KQRFFQQVHK HTYLKGRMDK ITSVAIPAAL AAASVALIES TMGKEKVHIN IVVIGHVDSG KSTTTGHLIY
101: KLGGIDKRVI ERFEKEAAEM NKRSFKYAWV LDKLKAERER GITIDIALWK FETTRYYCTV IDAPGHRDFI KNMITGTSQA DCAVLIIDST TGGFEAGISK
201: DGQTREHALL AFTLGVKQMI CCCNKMDATT PKYSKARYDE IVKEVSSYLK KVGYNPDKIP FVPISGFEGD NMIERSTNLD WYKGPTLLEA LDMINEPKRP
301: TDKPLRLPLQ DVYKIGGIGT VPVGRVETGV LKPGMVVTFG PSGLTTEVKS VEMHHESLPE ALPGDNVGFN VKNVAVKDLK RGFVASNSKD DPAKEAANFT
401: SQVIIMNHPG QIGNGYAPVL DCHTSHIAVK FAEILTKIDR RSGKELEKEP KFLKNGDAGF VKMIPTKPMV VETFSEYPPL GRFAVRDMRQ TVAVGVIKSV
501: EKKDPSGAKV TKSAAKKK

Best Arabidopsis Sequence Match ( AT1G07930.1 )
(BLAST)

001: MGKEKFHINI VVIGHVDSGK STTTGHLIYK LGGIDKRVIE RFEKEAAEMN KRSFKYAWVL DKLKAERERG ITIDIALWKF ETTKYYCTVI DAPGHRDFIK
101: NMITGTSQAD CAVLIIDSTT GGFEAGISKD GQTREHALLA FTLGVKQMIC CCNKMDATTP KYSKARYDEI IKEVSSYLKK VGYNPDKIPF VPISGFEGDN
201: MIERSTNLDW YKGPTLLEAL DQINEPKRPS DKPLRLPLQD VYKIGGIGTV PVGRVETGMI KPGMVVTFAP TGLTTEVKSV EMHHESLLEA LPGDNVGFNV
301: KNVAVKDLKR GYVASNSKDD PAKGAANFTS QVIIMNHPGQ IGNGYAPVLD CHTSHIAVKF SEILTKIDRR SGKEIEKEPK FLKNGDAGMV KMTPTKPMVV
401: ETFSEYPPLG RFAVRDMRQT VAVGVIKSVD KKDPTGAKVT KAAVKKGAK

Arabidopsis Description

A1Elongation factor 1-alpha 4 [Source:UniProtKB/Swiss-Prot;Acc:Q8GTY0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.