Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, cytosol
Predictor Summary:
Predictor Summary:
- mitochondrion 3
- cytosol 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr2P19000_001 | Banana | cytosol | 55.66 | 76.62 |
| VIT_19s0014g04110.t01 | Wine grape | cytosol | 54.72 | 47.93 |
| CDY09214 | Canola | cytosol | 66.04 | 43.75 |
| TraesCS2D01G320300.1 | Wheat | cytosol, nucleus, plastid | 59.43 | 39.62 |
| Bra031601.1-P | Field mustard | cytosol | 66.04 | 35.35 |
| GSMUA_Achr5P24440_001 | Banana | cytosol | 40.57 | 33.86 |
| GSMUA_Achr10P... | Banana | cytosol, plastid | 65.09 | 32.09 |
| CDY06287 | Canola | cytosol | 49.06 | 22.91 |
| GSMUA_Achr6P02020_001 | Banana | mitochondrion | 66.98 | 20.52 |
| CDY06289 | Canola | cytosol | 49.06 | 20.31 |
| CDY67375 | Canola | cytosol | 49.06 | 18.7 |
| TraesCS2D01G320500.1 | Wheat | cytosol | 60.38 | 17.34 |
| Bra020251.1-P | Field mustard | cytosol | 66.98 | 17.23 |
| TraesCS5D01G423400.1 | Wheat | cytosol | 67.92 | 16.11 |
| TraesCS5D01G423300.1 | Wheat | cytosol | 67.92 | 16.11 |
| TraesCS4D01G197200.1 | Wheat | cytosol | 67.92 | 16.11 |
| TraesCS4D01G197100.1 | Wheat | cytosol | 67.92 | 16.11 |
| KRG93959 | Soybean | nucleus | 67.92 | 16.11 |
| PGSC0003DMT400050663 | Potato | cytosol | 66.98 | 15.88 |
| KRH07098 | Soybean | cytosol, mitochondrion, nucleus | 66.98 | 15.88 |
| KRH58241 | Soybean | nucleus | 66.98 | 15.88 |
| Solyc11g069700.1.1 | Tomato | nucleus | 66.98 | 15.88 |
| VIT_08s0040g02330.t01 | Wine grape | cytosol | 66.98 | 15.88 |
| KRH34904 | Soybean | nucleus | 66.98 | 15.85 |
| Bra018669.1-P | Field mustard | cytosol | 66.98 | 15.81 |
| AT1G07940.3 | Thale cress | cytosol | 66.98 | 15.81 |
| AT1G07920.1 | Thale cress | cytosol | 66.98 | 15.81 |
| AT5G60390.2 | Thale cress | cytosol | 66.98 | 15.81 |
| AT1G07930.1 | Thale cress | cytosol | 66.98 | 15.81 |
| Bra018242.1-P | Field mustard | cytosol | 66.98 | 15.81 |
| Bra006661.1-P | Field mustard | cytosol | 66.98 | 15.81 |
| Bra031602.1-P | Field mustard | cytosol | 66.98 | 15.81 |
| Bra002483.1-P | Field mustard | cytosol | 66.98 | 15.81 |
| VIT_06s0004g03240.t01 | Wine grape | cytosol | 66.04 | 15.66 |
| TraesCS2D01G080900.1 | Wheat | cytosol, golgi, unclear | 66.04 | 15.66 |
| TraesCS2D01G080800.1 | Wheat | cytosol | 66.04 | 15.66 |
| PGSC0003DMT400020968 | Potato | cytosol | 66.04 | 15.66 |
| KRH57863 | Soybean | nucleus | 66.04 | 15.66 |
| KRH04781 | Soybean | endoplasmic reticulum | 66.04 | 15.66 |
| PGSC0003DMT400059830 | Potato | cytosol | 66.04 | 15.62 |
| Solyc06g009970.2.1 | Tomato | extracellular, nucleus, plastid | 66.04 | 15.62 |
| Solyc06g005060.2.1 | Tomato | cytosol | 66.04 | 15.62 |
| PGSC0003DMT400059832 | Potato | cytosol | 66.04 | 15.62 |
| PGSC0003DMT400053553 | Potato | cytosol | 66.04 | 15.62 |
| PGSC0003DMT400053547 | Potato | cytosol | 66.04 | 15.62 |
| VIT_13s0019g03920.t01 | Wine grape | cytosol | 66.98 | 15.6 |
| Bra020253.1-P | Field mustard | cytosol | 66.04 | 15.59 |
| CDX95108 | Canola | cytosol, extracellular | 67.92 | 14.78 |
| VIT_06s0004g03220.t01 | Wine grape | cytosol | 67.92 | 13.9 |
| Solyc06g009960.1.1 | Tomato | cytosol | 52.83 | 13.66 |
| CDX88757 | Canola | cytosol | 50.0 | 13.22 |
| GSMUA_Achr7P15510_001 | Banana | cytosol, plasma membrane | 49.06 | 12.75 |
| Bra031605.1-P | Field mustard | cytosol | 50.0 | 12.41 |
| CDY22710 | Canola | cytosol | 50.0 | 12.41 |
| CDY22711 | Canola | cytosol | 50.0 | 12.41 |
| CDY61938 | Canola | cytosol | 50.0 | 12.38 |
| CDY34479 | Canola | cytosol | 50.0 | 12.38 |
| CDY10804 | Canola | cytosol | 50.0 | 12.38 |
| CDY09211 | Canola | cytosol | 50.0 | 12.38 |
| Bra030707.1-P | Field mustard | cytosol | 66.98 | 12.03 |
| CDX93604 | Canola | cytosol | 50.94 | 11.74 |
| CDY58828 | Canola | cytosol | 50.0 | 9.33 |
| TraesCS2D01G075300.1 | Wheat | cytosol | 29.25 | 5.82 |
| TraesCS2D01G443300.1 | Wheat | cytosol | 35.85 | 5.59 |
| TraesCS5D01G542300.1 | Wheat | mitochondrion | 22.64 | 5.32 |
| TraesCS6D01G193000.1 | Wheat | nucleus, plastid | 21.7 | 4.89 |
| TraesCS2D01G562000.1 | Wheat | cytosol | 33.02 | 4.29 |
| CDX70032 | Canola | cytosol | 10.38 | 3.2 |
| CDY69678 | Canola | cytosol | 0.94 | 0.87 |
| CDY67376 | Canola | cytosol | 0.94 | 0.87 |
| CDY06288 | Canola | cytosol | 0.94 | 0.87 |
| CDY06290 | Canola | cytosol | 0.94 | 0.87 |
| GSMUA_Achr10P... | Banana | cytosol | 0.94 | 0.36 |
| GSMUA_Achr10P... | Banana | cytosol | 0.94 | 0.35 |
| GSMUA_Achr3P17840_001 | Banana | cytosol | 0.0 | 0.0 |
| GSMUA_Achr6P04090_001 | Banana | cytosol | 0.0 | 0.0 |
| GSMUA_AchrUn_... | Banana | cytosol | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:TraesCS2D01G323300.1 | EnsemblPlantsGene:TraesCS2D01G323300 | Gene3D:3.40.50.300 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0003924 | GO:GO:0005488 | GO:GO:0005525 | GO:GO:0016787 | InterPro:IPR000795 | InterPro:P-loop_NTPase |
| InterPro:TF_GTP-bd_dom | PANTHER:PTHR23115 | PANTHER:PTHR23115:SF230 | PFAM:PF00009 | PRINTS:PR00315 | SUPFAM:SSF52540 |
| MapMan:35.1 | : | : | : | : | : |
Description
No Description!
Coordinates
chr2D:-:415545782..415546102
Molecular Weight (calculated)
11896.5 Da
IEP (calculated)
9.088
GRAVY (calculated)
-0.076
Length
106 amino acids
Sequence
(BLAST)
(BLAST)
001: MFVFVIRALS AMVKDKTHIN IVVIGHGNSG KSTTTGHLVY ELGGIDRRVI ERFEDESAEM KKCGKYAWVL DKLKSERERG IAIDIALGKF ETTKYNFSVL
101: DITVTS
101: DITVTS
001: MGKEKFHINI VVIGHVDSGK STTTGHLIYK LGGIDKRVIE RFEKEAAEMN KRSFKYAWVL DKLKAERERG ITIDIALWKF ETTKYYCTVI DAPGHRDFIK
101: NMITGTSQAD CAVLIIDSTT GGFEAGISKD GQTREHALLA FTLGVKQMIC CCNKMDATTP KYSKARYDEI IKEVSSYLKK VGYNPDKIPF VPISGFEGDN
201: MIERSTNLDW YKGPTLLEAL DQINEPKRPS DKPLRLPLQD VYKIGGIGTV PVGRVIIMNH PGQIGNGYAP VLDCHTSHIA VKFSEILTKI DRRSGKEIEK
301: EPKFLKNGDA GMVKMTPTKP MVVETFSEYP PLGRFAVRDM RQTVAVGVIK SVDKKDPTGA KVTKAAVKKG AK
101: NMITGTSQAD CAVLIIDSTT GGFEAGISKD GQTREHALLA FTLGVKQMIC CCNKMDATTP KYSKARYDEI IKEVSSYLKK VGYNPDKIPF VPISGFEGDN
201: MIERSTNLDW YKGPTLLEAL DQINEPKRPS DKPLRLPLQD VYKIGGIGTV PVGRVIIMNH PGQIGNGYAP VLDCHTSHIA VKFSEILTKI DRRSGKEIEK
301: EPKFLKNGDA GMVKMTPTKP MVVETFSEYP PLGRFAVRDM RQTVAVGVIK SVDKKDPTGA KVTKAAVKKG AK
Arabidopsis Description
A1Elongation factor 1-alpha 4 [Source:UniProtKB/Swiss-Prot;Acc:Q8GTY0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.