Factsheet for VIT_08s0040g02330.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
vacuole 1
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_08s0056g00050.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G07920.1	VIT_08s0056g00050.t01	AT3G54220.1	19228333
AT1G07930.1	VIT_08s0056g00050.t01	AT3G54220.1	19228333

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P24440_001	Banana	cytosol	28.19	99.21
CDY09214	Canola	cytosol	35.12	98.12
VIT_06s0004g03240.t01	Wine grape	cytosol	97.54	97.54
HORVU5Hr1G051280.1	Barley	cytosol	22.6	97.12
PGSC0003DMT400050663	Potato	cytosol	96.42	96.42
Solyc11g069700.1.1	Tomato	nucleus	96.2	96.2
KXG20293	Sorghum	cytosol	95.97	95.97
KXG20294	Sorghum	cytosol	95.97	95.97
KXG20296	Sorghum	cytosol	95.97	95.97
KXG20299	Sorghum	cytosol	95.97	95.97
Zm00001d036904_P001	Maize	cytosol	95.97	95.97
VIT_13s0019g03920.t01	Wine grape	cytosol	97.54	95.82
Os03t0177400-01	Rice	cytosol	95.75	95.75
Os03t0177500-01	Rice	cytosol	95.75	95.75
Os03t0177900-01	Rice	plasma membrane	95.75	95.75
Os03t0178000-02	Rice	cytosol	95.75	95.75
Zm00001d037882_P001	Maize	cytosol	39.6	95.68
Bra031601.1-P	Field mustard	cytosol	42.28	95.45
GSMUA_Achr10P...	Banana	cytosol	60.18	95.39
Zm00001d046449_P003	Maize	cytosol	95.3	95.3
CDY06287	Canola	cytosol	48.32	95.15
CDY67375	Canola	cytosol	59.06	94.96
Zm00001d009870_P008	Maize	cytosol	95.75	94.9
Zm00001d037873_P010	Maize	cytosol	95.75	94.9
HORVU4Hr1G056740.1	Barley	cytosol	94.85	94.85
TraesCS4B01G196900.1	Wheat	golgi	94.85	94.85
TraesCS5B01G418100.1	Wheat	cytosol	94.85	94.85
TraesCS5B01G418200.1	Wheat	cytosol	94.85	94.85
Zm00001d037875_P014	Maize	cytosol	95.53	94.68
Zm00001d037877_P014	Maize	cytosol	95.53	94.68
PGSC0003DMT400020968	Potato	cytosol	94.63	94.63
CDX88757	Canola	cytosol	84.79	94.51
Zm00001d009868_P015	Maize	cytosol	95.3	94.46
Zm00001d037905_P010	Maize	cytosol	95.3	94.46
Bra002483.1-P	Field mustard	cytosol	94.85	94.43
Bra018669.1-P	Field mustard	cytosol	94.85	94.43
Bra031602.1-P	Field mustard	cytosol	94.85	94.43
Solyc06g005060.2.1	Tomato	cytosol	94.63	94.42
Solyc06g009970.2.1	Tomato	extracellular, nucleus, plastid	94.63	94.42
TraesCS4A01G107600.1	Wheat	cytosol	94.41	94.41
TraesCS4A01G107700.1	Wheat	cytosol	94.41	94.41
TraesCS5A01G415400.1	Wheat	cytosol	94.41	94.41
TraesCS5A01G415600.1	Wheat	cytosol	94.41	94.41
AT1G07920.1	Thale cress	cytosol	94.63	94.21
AT1G07930.1	Thale cress	cytosol	94.63	94.21
AT1G07940.3	Thale cress	cytosol	94.63	94.21
AT5G60390.2	Thale cress	cytosol	94.63	94.21
Bra018242.1-P	Field mustard	cytosol	94.63	94.21
Bra020253.1-P	Field mustard	cytosol	94.63	94.21
PGSC0003DMT400053547	Potato	cytosol	94.41	94.2
PGSC0003DMT400053553	Potato	cytosol	94.41	94.2
PGSC0003DMT400059830	Potato	cytosol	94.41	94.2
PGSC0003DMT400059832	Potato	cytosol	94.41	94.2
CDY09211	Canola	cytosol	90.16	94.16
CDY10804	Canola	cytosol	90.16	94.16
CDY34479	Canola	cytosol	90.16	94.16
CDY61938	Canola	cytosol	90.16	94.16
Bra031605.1-P	Field mustard	cytosol	89.71	93.91
CDY22710	Canola	cytosol	89.71	93.91
CDY22711	Canola	cytosol	89.71	93.91
GSMUA_Achr10P...	Banana	cytosol	58.61	93.91
CDY06289	Canola	cytosol	53.69	93.75
Bra020251.1-P	Field mustard	cytosol	86.35	93.69
Solyc06g009960.1.1	Tomato	cytosol	85.91	93.66
Bra006661.1-P	Field mustard	cytosol	93.96	93.54
HORVU4Hr1G056830.1	Barley	cytosol	61.07	93.17
OQU75582	Sorghum	cytosol	25.95	92.8
HORVU5Hr1G100200.3	Barley	mitochondrion	94.85	91.38
HORVU5Hr1G100700.3	Barley	plasma membrane	94.85	91.18
GSMUA_Achr6P04090_001	Banana	cytosol	39.82	90.36
Zm00001d009887_P001	Maize	cytosol	29.31	89.73
CDY06288	Canola	cytosol	23.04	89.57
CDY06290	Canola	cytosol	23.04	89.57
CDY67376	Canola	cytosol	23.04	89.57
CDY69678	Canola	cytosol	23.04	89.57
HORVU4Hr1G056820.1	Barley	plasma membrane	95.3	89.5
HORVU6Hr1G085320.3	Barley	cytosol	88.14	89.34
GSMUA_Achr3P17840_001	Banana	cytosol	30.2	88.82
TraesCS4B01G196800.2	Wheat	golgi	94.85	87.78
CDX93604	Canola	cytosol	90.16	87.61
GSMUA_Achr7P15510_001	Banana	cytosol, plasma membrane	79.64	87.25
CDX70032	Canola	cytosol	67.11	87.21
HORVU6Hr1G085370.1	Barley	cytosol	88.14	87.17
CDX95108	Canola	cytosol, extracellular	94.85	87.06
GSMUA_AchrUn_...	Banana	cytosol	40.49	86.6
OQU75597	Sorghum	cytosol	33.11	84.57
VIT_06s0004g03220.t01	Wine grape	cytosol	97.54	84.17
VIT_19s0014g04110.t01	Wine grape	cytosol	22.15	81.82
GSMUA_Achr10P...	Banana	cytosol, plastid	38.93	80.93
Bra030707.1-P	Field mustard	cytosol	94.85	71.86
CDY58828	Canola	cytosol	89.71	70.6
GSMUA_Achr6P02020_001	Banana	mitochondrion	53.47	69.08
TraesCS2D01G323300.1	Wheat	cytosol, mitochondrion	15.88	66.98
VIT_17s0000g02860.t01	Wine grape	plastid	35.79	30.83
VIT_07s0104g00600.t01	Wine grape	mitochondrion	28.64	28.51
VIT_05s0029g00030.t01	Wine grape	cytosol	8.28	28.24
VIT_17s0000g09140.t01	Wine grape	cytosol	10.07	28.12
VIT_14s0066g00220.t01	Wine grape	plastid	29.98	27.52
VIT_17s0000g09370.t01	Wine grape	plastid	29.08	26.75
VIT_03s0017g00530.t01	Wine grape	cytosol	35.12	20.66
VIT_12s0034g01800.t01	Wine grape	cytosol	8.28	10.03

Protein Annotations

EntrezGene:100244821	wikigene:100244821	MapMan:17.5.1.1	Gene3D:2.40.30.10	Gene3D:3.40.50.300	UniProt:A5C4C2
EMBL:AM443412	EMBL:AM481899	ProteinID:CAN66350	ProteinID:CAN66350.1	ProteinID:CAN71914	ProteinID:CAN71914.1
ProteinID:CCB57048	ProteinID:CCB57048.1	InterPro:EFTu-like_2	EMBL:FN596008	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003746	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488
GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006412
GO:GO:0006414	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016787	GO:GO:0019538	InterPro:G_TR_CS	InterPro:IPR000795	EntrezGene:LOC100244821	wikigene:LOC100244821
HAMAP:MF_00118_A	InterPro:P-loop_NTPase	PFAM:PF00009	PFAM:PF03143	PFAM:PF03144	PRINTS:PR00315
ScanProsite:PS00301	PFscan:PS51722	PANTHER:PTHR23115	PANTHER:PTHR23115:SF230	SUPFAM:SSF50447	SUPFAM:SSF50465
SUPFAM:SSF52540	TIGR:TC52756	InterPro:TF_GTP-bd_dom	TIGRFAMs:TIGR00483	InterPro:Transl_B-barrel_sf	InterPro:Transl_elong_EF1A/Init_IF2_C
InterPro:Transl_elong_EF1A_euk/arc	InterPro:Transl_elong_EFTu/EF1A_C	UniParc:UPI0001521F57	ArrayExpress:VIT_08s0040g02330	EnsemblPlantsGene:VIT_08s0040g02330	EnsemblPlants:VIT_08s0040g02330.t01
unigene:Vvi.24299	unigene:Vvi.24359	RefSeq:XP_002279598	RefSeq:XP_002279598.1	:	:

Description

Elongation factor 1-alpha [Source:UniProtKB/TrEMBL;Acc:A5C4C2]

Coordinates

chr8:+:13421584..13423563

Molecular Weight (calculated)

49338.9 Da

IEP (calculated)

9.583

GRAVY (calculated)

-0.321

Length

447 amino acids

Sequence
(BLAST)

001: MGKEKVHINI VVIGHVDSGK STTTGHLIYK LGGIDKRVIE RFEKEAAEMN KRSFKYAWVL DKLKAERERG ITIDIALWKF ETTKYYCTVI DAPGHRDFIK
101: NMITGTSQAD CAVLIIDSTT GGFEAGISKD GQTREHALLA FTLGVRQMIC CCNKMDATTP KYSKSRYDEI VKEVSSYLKK VGYNPDKIPF VPISGFEGDN
201: MIERSTNLDW YKGPTLLEAL DMIHEPKRPS DKPLRLPLQD VYKIGGIGTV PVGRVETGII KPGMVVTFGP SGLTTEVKSV EMHHESLVEG LPGDNVGFNV
301: KNVAVKDLKR GFVASNSKDD PAKEAANFTA QVIIMNHPGQ IGNGYAPVLD CHTSHIAVKF AEITTKIDRR SGKELEKEPK FLKNGDAGFV KMIPTKPMVV
401: ETFSEYPPLG RFAVRDMRQT VAVGVIKSVE KKDPSGAKVT KSAAKKK

Best Arabidopsis Sequence Match ( AT1G07930.1 )
(BLAST)

001: MGKEKFHINI VVIGHVDSGK STTTGHLIYK LGGIDKRVIE RFEKEAAEMN KRSFKYAWVL DKLKAERERG ITIDIALWKF ETTKYYCTVI DAPGHRDFIK
101: NMITGTSQAD CAVLIIDSTT GGFEAGISKD GQTREHALLA FTLGVKQMIC CCNKMDATTP KYSKARYDEI IKEVSSYLKK VGYNPDKIPF VPISGFEGDN
201: MIERSTNLDW YKGPTLLEAL DQINEPKRPS DKPLRLPLQD VYKIGGIGTV PVGRVETGMI KPGMVVTFAP TGLTTEVKSV EMHHESLLEA LPGDNVGFNV
301: KNVAVKDLKR GYVASNSKDD PAKGAANFTS QVIIMNHPGQ IGNGYAPVLD CHTSHIAVKF SEILTKIDRR SGKEIEKEPK FLKNGDAGMV KMTPTKPMVV
401: ETFSEYPPLG RFAVRDMRQT VAVGVIKSVD KKDPTGAKVT KAAVKKGAK

Arabidopsis Description

A1Elongation factor 1-alpha 4 [Source:UniProtKB/Swiss-Prot;Acc:Q8GTY0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.