Factsheet for VIT_14s0066g00220.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_17s0000g09370.t01	Wine grape	plastid	84.19	84.36
VIT_07s0104g00600.t01	Wine grape	mitochondrion	57.29	62.14
VIT_17s0000g09140.t01	Wine grape	cytosol	17.66	53.75
VIT_05s0029g00030.t01	Wine grape	cytosol	13.96	51.91
VIT_06s0004g03240.t01	Wine grape	cytosol	27.52	29.98
VIT_08s0040g02330.t01	Wine grape	cytosol	27.52	29.98
VIT_13s0019g03920.t01	Wine grape	cytosol	27.31	29.23
VIT_19s0014g04110.t01	Wine grape	cytosol	7.19	28.93
VIT_06s0004g03220.t01	Wine grape	cytosol	27.52	25.87
VIT_12s0034g01800.t01	Wine grape	cytosol	18.07	23.85
VIT_17s0000g02860.t01	Wine grape	plastid	24.23	22.74
VIT_03s0017g00530.t01	Wine grape	cytosol	24.64	15.79

Protein Annotations

EntrezGene:100245586	wikigene:100245586	MapMan:17.7.4.1	Gene3D:2.40.30.10	Gene3D:3.40.50.300	ProteinID:CCB58448
ProteinID:CCB58448.1	InterPro:EFTU_2	InterPro:EFTu-like_2	UniProt:F6HUT0	EMBL:FN596252	GO:GO:0000166
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003746	GO:GO:0003824	GO:GO:0003924
GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006412
GO:GO:0006414	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016787	GO:GO:0019538	InterPro:G_TR_CS	InterPro:IPR000795	EntrezGene:LOC100245586	wikigene:LOC100245586
HAMAP:MF_00118_B	InterPro:P-loop_NTPase	PFAM:PF00009	PFAM:PF03143	PFAM:PF03144	PRINTS:PR00315
ScanProsite:PS00301	PFscan:PS51722	PANTHER:PTHR43721	PANTHER:PTHR43721:SF6	SUPFAM:SSF50447	SUPFAM:SSF50465
SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	TIGR:TC58167	TIGR:TC67381	InterPro:TF_GTP-bd_dom	TIGRFAMs:TIGR00231
TIGRFAMs:TIGR00485	InterPro:Transl_B-barrel_sf	InterPro:Transl_elong_EF1A/Init_IF2_C	InterPro:Transl_elong_EFTu/EF1A_C	InterPro:Transl_elong_EFTu/EF1A_bac/org	UniParc:UPI0001984B4E
ArrayExpress:VIT_14s0066g00220	EnsemblPlantsGene:VIT_14s0066g00220	EnsemblPlants:VIT_14s0066g00220.t01	unigene:Vvi.1870	RefSeq:XP_002271032	RefSeq:XP_002271032.1
RefSeq:XP_003633809	RefSeq:XP_003633809.1	RefSeq:XP_003633810	RefSeq:XP_003633810.1	SEG:seg	:

Description

Elongation factor Tu [Source:UniProtKB/TrEMBL;Acc:F6HUT0]

Coordinates

chr14:+:26778213..26779904

Molecular Weight (calculated)

52946.8 Da

IEP (calculated)

6.870

GRAVY (calculated)

-0.162

Length

487 amino acids

Sequence
(BLAST)

001: MASIVGAPST PSKSLFTSPS LSNPKPTSFF HKTQTLATKS NPPFASSFTN ASSIFRYSVL SSPSTGSSPF RRRSLTVRAA RGKFERKKPH VNIGTIGHVD
101: HGKTTLTAAL TMALASMGNS APKKYDEIDA APEERARGIT INTATVEYET ESRHYAHVDC PGHADYVKNM ITGAAQMDGA ILVVSGADGP MPQTKEHILL
201: AKQVGVPNMV VFLNKQDQVD DEELLQLVEL EVRELLASYE FPGDDIPIVS GSALLALEAL MANPSIKRGE NEWVDKIYEL MDAVDSYIPI PQRQTDLPFL
301: LAVEDVFSIT GRGTVATGRV ERGTIKVGET VDLVGLRETR ATTVTGVEMF QKILDEALAG DNVGLLLRGI QKADIQRGMV LAKPGTITPH TKFSAIVYIL
401: KKEEGGRHSP FFAGYRPQFY MRTTDVTGKV AQIMNDKDEE SKMVMPGDRV KMVVELIMPV ACEQGMRFAI REGGKTVGAG VIQSIIE

Best Arabidopsis Sequence Match ( AT4G20360.2 )
(BLAST)

001: MAISAPAACS SSSRILCSYS SPSPSLCPAI STSGKLKTLT LSSSFLPSYS LTTTSASQST RRSFTVRAAR GKFERKKPHV NIGTIGHVDH GKTTLTAALT
101: MALASIGSSV AKKYDEIDAA PEERARGITI NTATVEYETE NRHYAHVDCP GHADYVKNMI TGAAQMDGAI LVVSGADGPM PQTKEHILLA KQVGVPDMVV
201: FLNKEDQVDD AELLELVELE VRELLSSYEF NGDDIPIISG SALLAVETLT ENPKVKRGDN KWVDKIYELM DAVDDYIPIP QRQTELPFLL AVEDVFSITG
301: RGTVATGRVE RGTVKVGETV DLVGLRETRS YTVTGVEMFQ KILDEALAGD NVGLLLRGIQ KADIQRGMVL AKPGSITPHT KFEAIIYVLK KEEGGRHSPF
401: FAGYRPQFYM RTTDVTGKVT KIMNDKDEES KMVMPGDRVK IVVELIVPVA CEQGMRFAIR EGGKTVGAGV IGTILE

Arabidopsis Description

TUFAElongation factor Tu, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P17745]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.