Factsheet for VIT_17s0000g09140.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
mitochondrion 2
plastid 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_05s0029g00030.t01	Wine grape	cytosol	65.0	79.39
VIT_07s0104g00600.t01	Wine grape	mitochondrion	68.12	24.28
GSMUA_Achr3P24830_001	Banana	mitochondrion	67.5	23.74
Os03t0851100-01	Rice	mitochondrion	66.88	23.62
KRH20931	Soybean	mitochondrion	66.25	23.56
GSMUA_Achr8P06040_001	Banana	mitochondrion	66.88	23.52
Zm00001d034856_P003	Maize	mitochondrion	66.25	23.45
EER90508	Sorghum	mitochondrion	66.25	23.4
TraesCS4A01G330400.1	Wheat	mitochondrion	65.62	23.23
TraesCS5B01G545200.1	Wheat	mitochondrion	65.62	23.23
Zm00001d012846_P005	Maize	mitochondrion	65.62	23.13
TraesCS5D01G542300.1	Wheat	mitochondrion	65.0	23.06
TraesCS1B01G431000.1	Wheat	cytosol	55.62	22.25
KRH11356	Soybean	mitochondrion	56.88	22.03
TraesCS5B01G545300.2	Wheat	cytosol	54.38	21.86
VIT_19s0014g04110.t01	Wine grape	cytosol	16.25	21.49
VIT_17s0000g09370.t01	Wine grape	plastid	53.75	17.7
VIT_14s0066g00220.t01	Wine grape	plastid	53.75	17.66
HORVU5Hr1G122350.1	Barley	cytosol	26.25	13.68
VIT_08s0040g02330.t01	Wine grape	cytosol	28.12	10.07
VIT_13s0019g03920.t01	Wine grape	cytosol	27.5	9.67
VIT_06s0004g03240.t01	Wine grape	cytosol	26.88	9.62
VIT_06s0004g03220.t01	Wine grape	cytosol	27.5	8.49
VIT_17s0000g02860.t01	Wine grape	plastid	26.25	8.09
Zm00001d040673_P001	Maize	mitochondrion	4.38	6.14
VIT_03s0017g00530.t01	Wine grape	cytosol	27.5	5.79
VIT_12s0034g01800.t01	Wine grape	cytosol	13.12	5.69

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	ProteinID:CCB42942	ProteinID:CCB42942.1	UniProt:F6GSH7	EMBL:FN594950
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525
GO:GO:0016787	InterPro:G_TR_CS	InterPro:IPR000795	InterPro:P-loop_NTPase	PFAM:PF00009	PRINTS:PR00315
ScanProsite:PS00301	PANTHER:PTHR43721	PANTHER:PTHR43721:SF12	SUPFAM:SSF52540	InterPro:TF_GTP-bd_dom	UniParc:UPI0002108091
ArrayExpress:VIT_17s0000g09140	EnsemblPlantsGene:VIT_17s0000g09140	EnsemblPlants:VIT_17s0000g09140.t01	:	:	:

Description

No Description!

Coordinates

chr17:-:10720461..10720943

Molecular Weight (calculated)

17608.1 Da

IEP (calculated)

7.757

GRAVY (calculated)

-0.359

Length

160 amino acids

Sequence
(BLAST)

001: MGVALEDNDD YGTPPFNAEQ LVSLHGKTTL TAAITRVLAE EGKAKVVALD EIDKAPKEKK RGITIAMAHV EYETAKRHYA HVDCPGHADY EKNMITGAAQ
101: MDVSIQVVFA PNGPMPRTKE HILLARQKWN SVSFLASTSS LGMKFPSFGA QIYARYKDTQ

Best Arabidopsis Sequence Match ( AT4G02930.1 )
(BLAST)

001: MASVVLRNPS SKRLVPFSSQ IYSRCGASVT SSYSISHSIG GDDLSSSTFG TSSFWRSMAT FTRNKPHVNV GTIGHVDHGK TTLTAAITKV LAEEGKAKAI
101: AFDEIDKAPE EKKRGITIAT AHVEYETAKR HYAHVDCPGH ADYVKNMITG AAQMDGGILV VSGPDGPMPQ TKEHILLARQ VGVPSLVCFL NKVDVVDDPE
201: LLELVEMELR ELLSFYKFPG DDIPIIRGSA LSALQGTNDE IGRQAILKLM DAVDEYIPDP VRVLDKPFLM PIEDVFSIQG RGTVATGRIE QGVIKVGEEV
301: EILGLREGGV PLKSTVTGVE MFKKILDNGQ AGDNVGLLLR GLKREDIQRG MVIAKPGSCK TYKKFEAEIY VLTKDEGGRH TAFFSNYRPQ FYLRTADITG
401: KVELPENVKM VMPGDNVTAV FELIMPVPLE TGQRFALREG GRTVGAGVVS KVMT

Arabidopsis Description

TUFAElongation factor Tu, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9ZT91]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.