Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 5
- vacuole 1
- nucleus 1
- mitochondrion 1
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
PPI
Inferred distinct locusB in Crop
locusB | locations |
---|---|
VIT_08s0056g00050.t01 |
Inferred from Arabidopsis experimental PPI
Ath locusA | locusB | Ath locusB | Paper |
---|---|---|---|
AT1G07920.1 | VIT_08s0056g00050.t01 | AT3G54220.1 | 19228333 |
AT1G07930.1 | VIT_08s0056g00050.t01 | AT3G54220.1 | 19228333 |
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
CDY09214 | Canola | cytosol | 34.51 | 98.12 |
VIT_08s0040g02330.t01 | Wine grape | cytosol | 95.82 | 97.54 |
VIT_06s0004g03240.t01 | Wine grape | cytosol | 95.6 | 97.32 |
HORVU5Hr1G051280.1 | Barley | cytosol | 22.2 | 97.12 |
Os03t0177400-01 | Rice | cytosol | 94.51 | 96.2 |
Os03t0177500-01 | Rice | cytosol | 94.51 | 96.2 |
Os03t0177900-01 | Rice | plasma membrane | 94.51 | 96.2 |
Os03t0178000-02 | Rice | cytosol | 94.51 | 96.2 |
Bra031601.1-P | Field mustard | cytosol | 41.76 | 95.96 |
Zm00001d037882_P001 | Maize | cytosol | 38.9 | 95.68 |
KXG20299 | Sorghum | cytosol | 93.85 | 95.53 |
KXG20296 | Sorghum | cytosol | 93.85 | 95.53 |
KXG20294 | Sorghum | cytosol | 93.85 | 95.53 |
KXG20293 | Sorghum | cytosol | 93.85 | 95.53 |
Zm00001d036904_P001 | Maize | cytosol | 93.85 | 95.53 |
CDY67375 | Canola | cytosol | 58.24 | 95.32 |
Zm00001d046449_P003 | Maize | cytosol | 93.63 | 95.3 |
CDY06287 | Canola | cytosol | 47.47 | 95.15 |
TraesCS5B01G418200.1 | Wheat | cytosol | 93.41 | 95.08 |
TraesCS4B01G196900.1 | Wheat | golgi | 93.41 | 95.08 |
HORVU4Hr1G056740.1 | Barley | cytosol | 93.41 | 95.08 |
TraesCS5B01G418100.1 | Wheat | cytosol | 93.41 | 95.08 |
Zm00001d037873_P010 | Maize | cytosol | 94.07 | 94.9 |
Zm00001d009870_P008 | Maize | cytosol | 94.07 | 94.9 |
Zm00001d037875_P014 | Maize | cytosol | 93.85 | 94.68 |
Zm00001d037877_P014 | Maize | cytosol | 93.85 | 94.68 |
TraesCS5A01G415600.1 | Wheat | cytosol | 92.97 | 94.63 |
TraesCS4A01G107600.1 | Wheat | cytosol | 92.97 | 94.63 |
TraesCS4A01G107700.1 | Wheat | cytosol | 92.97 | 94.63 |
TraesCS5A01G415400.1 | Wheat | cytosol | 92.97 | 94.63 |
CDX88757 | Canola | cytosol | 83.3 | 94.51 |
Zm00001d037905_P010 | Maize | cytosol | 93.63 | 94.46 |
Zm00001d009868_P015 | Maize | cytosol | 93.63 | 94.46 |
Bra002483.1-P | Field mustard | cytosol | 93.19 | 94.43 |
Bra018669.1-P | Field mustard | cytosol | 93.19 | 94.43 |
Bra031602.1-P | Field mustard | cytosol | 93.19 | 94.43 |
AT1G07920.1 | Thale cress | cytosol | 92.97 | 94.21 |
AT1G07930.1 | Thale cress | cytosol | 92.97 | 94.21 |
AT5G60390.2 | Thale cress | cytosol | 92.97 | 94.21 |
AT1G07940.3 | Thale cress | cytosol | 92.97 | 94.21 |
Bra018242.1-P | Field mustard | cytosol | 92.97 | 94.21 |
Bra020253.1-P | Field mustard | cytosol | 92.97 | 94.21 |
CDY61938 | Canola | cytosol | 88.57 | 94.16 |
CDY09211 | Canola | cytosol | 88.57 | 94.16 |
CDY34479 | Canola | cytosol | 88.57 | 94.16 |
CDY10804 | Canola | cytosol | 88.57 | 94.16 |
CDY06289 | Canola | cytosol | 52.97 | 94.14 |
CDY22711 | Canola | cytosol | 88.13 | 93.91 |
Bra031605.1-P | Field mustard | cytosol | 88.13 | 93.91 |
CDY22710 | Canola | cytosol | 88.13 | 93.91 |
Bra020251.1-P | Field mustard | cytosol | 84.84 | 93.69 |
Bra006661.1-P | Field mustard | cytosol | 92.31 | 93.54 |
HORVU4Hr1G056830.1 | Barley | cytosol | 59.78 | 92.83 |
OQU75582 | Sorghum | cytosol | 25.49 | 92.8 |
HORVU5Hr1G100200.3 | Barley | mitochondrion | 93.41 | 91.59 |
HORVU5Hr1G100700.3 | Barley | plasma membrane | 93.41 | 91.4 |
Zm00001d009887_P001 | Maize | cytosol | 28.79 | 89.73 |
HORVU6Hr1G085320.3 | Barley | cytosol | 86.59 | 89.34 |
HORVU4Hr1G056820.1 | Barley | plasma membrane | 93.41 | 89.29 |
CDY67376 | Canola | cytosol | 22.42 | 88.7 |
CDY69678 | Canola | cytosol | 22.42 | 88.7 |
CDY06290 | Canola | cytosol | 22.42 | 88.7 |
CDY06288 | Canola | cytosol | 22.42 | 88.7 |
TraesCS4B01G196800.2 | Wheat | golgi | 93.41 | 87.99 |
CDX93604 | Canola | cytosol | 88.57 | 87.61 |
CDX70032 | Canola | cytosol | 65.93 | 87.21 |
HORVU6Hr1G085370.1 | Barley | cytosol | 86.59 | 87.17 |
CDX95108 | Canola | cytosol, extracellular | 93.19 | 87.06 |
OQU75597 | Sorghum | cytosol | 32.75 | 85.14 |
VIT_06s0004g03220.t01 | Wine grape | cytosol | 95.82 | 84.17 |
VIT_19s0014g04110.t01 | Wine grape | cytosol | 21.76 | 81.82 |
Bra030707.1-P | Field mustard | cytosol | 93.19 | 71.86 |
CDY58828 | Canola | cytosol | 88.13 | 70.6 |
TraesCS2D01G323300.1 | Wheat | cytosol, mitochondrion | 15.6 | 66.98 |
VIT_17s0000g02860.t01 | Wine grape | plastid | 35.16 | 30.83 |
VIT_05s0029g00030.t01 | Wine grape | cytosol | 8.13 | 28.24 |
VIT_07s0104g00600.t01 | Wine grape | mitochondrion | 27.25 | 27.62 |
VIT_17s0000g09140.t01 | Wine grape | cytosol | 9.67 | 27.5 |
VIT_14s0066g00220.t01 | Wine grape | plastid | 29.23 | 27.31 |
VIT_17s0000g09370.t01 | Wine grape | plastid | 28.35 | 26.54 |
VIT_03s0017g00530.t01 | Wine grape | cytosol | 34.95 | 20.92 |
VIT_12s0034g01800.t01 | Wine grape | cytosol | 8.13 | 10.03 |
Protein Annotations
EntrezGene:100261589 | wikigene:100261589 | MapMan:17.5.1.1 | Gene3D:2.40.30.10 | Gene3D:3.40.50.300 | EMBL:AM426329 |
EMBL:AM446534 | ProteinID:CAN69000 | ProteinID:CAN69000.1 | ProteinID:CAN76417 | ProteinID:CAN76417.1 | ProteinID:CCB56205 |
ProteinID:CCB56205.1 | InterPro:EFTu-like_2 | UniProt:F6HNI6 | EMBL:FN595998 | GO:GO:0000166 | GO:GO:0003674 |
GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003746 | GO:GO:0003824 | GO:GO:0003924 | GO:GO:0005488 |
GO:GO:0005525 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006412 |
GO:GO:0006414 | GO:GO:0008135 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
GO:GO:0016787 | GO:GO:0019538 | InterPro:G_TR_CS | InterPro:IPR000795 | EntrezGene:LOC100261589 | wikigene:LOC100261589 |
HAMAP:MF_00118_A | InterPro:P-loop_NTPase | PFAM:PF00009 | PFAM:PF03143 | PFAM:PF03144 | PRINTS:PR00315 |
ScanProsite:PS00301 | PFscan:PS51722 | PANTHER:PTHR23115 | PANTHER:PTHR23115:SF230 | SUPFAM:SSF50447 | SUPFAM:SSF50465 |
SUPFAM:SSF52540 | TIGR:TC55313 | InterPro:TF_GTP-bd_dom | TIGRFAMs:TIGR00483 | InterPro:Transl_B-barrel_sf | InterPro:Transl_elong_EF1A/Init_IF2_C |
InterPro:Transl_elong_EF1A_euk/arc | InterPro:Transl_elong_EFTu/EF1A_C | UniParc:UPI000210A44F | ArrayExpress:VIT_13s0019g03920 | EnsemblPlantsGene:VIT_13s0019g03920 | EnsemblPlants:VIT_13s0019g03920.t01 |
unigene:Vvi.24302 | unigene:Vvi.24373 | RefSeq:XP_002277159 | RefSeq:XP_002277159.1 | : | : |
Description
Elongation factor 1-alpha [Source:UniProtKB/TrEMBL;Acc:F6HNI6]
Coordinates
chr13:+:5164883..5167324
Molecular Weight (calculated)
50325.3 Da
IEP (calculated)
9.578
GRAVY (calculated)
-0.291
Length
455 amino acids
Sequence
(BLAST)
(BLAST)
001: MIPSKEFIMG KEKVHINIVV IGHVDSGKST TTGHLIYKLG GIDKRVIERF EKEAAEMNKR SFKYAWVLDK LKAERERGIT IDIALWKFET TKYYCTVIDA
101: PGHRDFIKNM ITGTSQADCA VLIIDSTTGG FEAGISKDGQ TREHALLAFT LGVRQMICCC NKMDATTPKY SKARYDEIVK EVSSYLKKVG YNPDKIPFVP
201: ISGFEGDNMI ERSTNLDWYK GPTLLEALDM VQEPKRPSDK PLRLPLQDVY KIGGIGTVPV GRVETGILKP GMVVTFGPTG LTTEVKSVEM HHESLVEALP
301: GDNVGFNVKN VAVKDLKRGF VASNSKDDPA KEAANFISQV IIMNHPGQIG NGYAPVLDCH TSHIAVKFAE IMTKIDRRSG KELEKEPKFL KNGDAGLVKM
401: IPTKPMVVET FSEYPPLGRF AVRDMRQTVA VGVIKNVEKK DPSGAKVTKS AAKKK
101: PGHRDFIKNM ITGTSQADCA VLIIDSTTGG FEAGISKDGQ TREHALLAFT LGVRQMICCC NKMDATTPKY SKARYDEIVK EVSSYLKKVG YNPDKIPFVP
201: ISGFEGDNMI ERSTNLDWYK GPTLLEALDM VQEPKRPSDK PLRLPLQDVY KIGGIGTVPV GRVETGILKP GMVVTFGPTG LTTEVKSVEM HHESLVEALP
301: GDNVGFNVKN VAVKDLKRGF VASNSKDDPA KEAANFISQV IIMNHPGQIG NGYAPVLDCH TSHIAVKFAE IMTKIDRRSG KELEKEPKFL KNGDAGLVKM
401: IPTKPMVVET FSEYPPLGRF AVRDMRQTVA VGVIKNVEKK DPSGAKVTKS AAKKK
001: MGKEKFHINI VVIGHVDSGK STTTGHLIYK LGGIDKRVIE RFEKEAAEMN KRSFKYAWVL DKLKAERERG ITIDIALWKF ETTKYYCTVI DAPGHRDFIK
101: NMITGTSQAD CAVLIIDSTT GGFEAGISKD GQTREHALLA FTLGVKQMIC CCNKMDATTP KYSKARYDEI IKEVSSYLKK VGYNPDKIPF VPISGFEGDN
201: MIERSTNLDW YKGPTLLEAL DQINEPKRPS DKPLRLPLQD VYKIGGIGTV PVGRVETGMI KPGMVVTFAP TGLTTEVKSV EMHHESLLEA LPGDNVGFNV
301: KNVAVKDLKR GYVASNSKDD PAKGAANFTS QVIIMNHPGQ IGNGYAPVLD CHTSHIAVKF SEILTKIDRR SGKEIEKEPK FLKNGDAGMV KMTPTKPMVV
401: ETFSEYPPLG RFAVRDMRQT VAVGVIKSVD KKDPTGAKVT KAAVKKGAK
101: NMITGTSQAD CAVLIIDSTT GGFEAGISKD GQTREHALLA FTLGVKQMIC CCNKMDATTP KYSKARYDEI IKEVSSYLKK VGYNPDKIPF VPISGFEGDN
201: MIERSTNLDW YKGPTLLEAL DQINEPKRPS DKPLRLPLQD VYKIGGIGTV PVGRVETGMI KPGMVVTFAP TGLTTEVKSV EMHHESLLEA LPGDNVGFNV
301: KNVAVKDLKR GYVASNSKDD PAKGAANFTS QVIIMNHPGQ IGNGYAPVLD CHTSHIAVKF SEILTKIDRR SGKEIEKEPK FLKNGDAGMV KMTPTKPMVV
401: ETFSEYPPLG RFAVRDMRQT VAVGVIKSVD KKDPTGAKVT KAAVKKGAK
Arabidopsis Description
A1Elongation factor 1-alpha 4 [Source:UniProtKB/Swiss-Prot;Acc:Q8GTY0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.