Factsheet for VIT_07s0104g00600.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 4
mitochondrion 8

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG95471	Soybean	nucleus	87.31	86.73
KRH67153	Soybean	nucleus	86.86	85.9
GSMUA_Achr3P24830_001	Banana	mitochondrion	85.75	84.62
GSMUA_Achr8P06040_001	Banana	mitochondrion	85.75	84.62
HORVU5Hr1G122350.1	Barley	cytosol	56.57	82.74
Os03t0851100-01	Rice	mitochondrion	82.85	82.12
EER90508	Sorghum	mitochondrion	82.63	81.9
Zm00001d034856_P003	Maize	mitochondrion	81.74	81.19
TraesCS5B01G545200.1	Wheat	mitochondrion	78.62	78.1
TraesCS4A01G330400.1	Wheat	mitochondrion	78.4	77.88
TraesCS5D01G542300.1	Wheat	mitochondrion	78.17	77.83
Zm00001d012846_P005	Maize	mitochondrion	78.62	77.75
Zm00001d040673_P001	Maize	mitochondrion	19.15	75.44
TraesCS1B01G431000.1	Wheat	cytosol	66.15	74.25
TraesCS5B01G545300.2	Wheat	cytosol	63.7	71.86
VIT_17s0000g09140.t01	Wine grape	cytosol	24.28	68.12
VIT_05s0029g00030.t01	Wine grape	cytosol	19.38	66.41
VIT_14s0066g00220.t01	Wine grape	plastid	62.14	57.29
VIT_17s0000g09370.t01	Wine grape	plastid	61.47	56.79
VIT_12s0034g01800.t01	Wine grape	cytosol	29.84	36.31
VIT_19s0014g04110.t01	Wine grape	cytosol	8.02	29.75
VIT_08s0040g02330.t01	Wine grape	cytosol	28.51	28.64
VIT_06s0004g03240.t01	Wine grape	cytosol	27.62	27.74
VIT_13s0019g03920.t01	Wine grape	cytosol	27.62	27.25
VIT_06s0004g03220.t01	Wine grape	cytosol	27.62	23.94
VIT_17s0000g02860.t01	Wine grape	plastid	25.39	21.97
VIT_03s0017g00530.t01	Wine grape	cytosol	27.84	16.45

Protein Annotations

EntrezGene:104879774	MapMan:17.7.4.1	Gene3D:2.40.30.10	Gene3D:3.40.50.300	UniProt:A5BV56	EMBL:AM472308
ProteinID:CAN61809	ProteinID:CAN61809.1	ProteinID:CBI32326	ProteinID:CBI32326.3	InterPro:EFTU_2	InterPro:EFTu-like_2
EMBL:FN596005	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003746
GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0006412	GO:GO:0006414	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	InterPro:G_TR_CS	InterPro:IPR000795
HAMAP:MF_00118_B	InterPro:P-loop_NTPase	PFAM:PF00009	PFAM:PF03143	PFAM:PF03144	PRINTS:PR00315
ScanProsite:PS00301	PFscan:PS51722	PANTHER:PTHR43721	PANTHER:PTHR43721:SF12	SUPFAM:SSF50447	SUPFAM:SSF50465
SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:TF_GTP-bd_dom	TIGRFAMs:TIGR00231	TIGRFAMs:TIGR00485	InterPro:Transl_B-barrel_sf
InterPro:Transl_elong_EF1A/Init_IF2_C	InterPro:Transl_elong_EFTu/EF1A_C	InterPro:Transl_elong_EFTu/EF1A_bac/org	UniParc:UPI0001521BD3	ArrayExpress:VIT_07s0104g00600	EnsemblPlantsGene:VIT_07s0104g00600
EnsemblPlants:VIT_07s0104g00600.t01	unigene:Vvi.12761	RefSeq:XP_010652106.1	SEG:seg	:	:

Description

Elongation factor Tu [Source:UniProtKB/TrEMBL;Acc:A5BV56]

Coordinates

chr7:-:1805891..1812931

Molecular Weight (calculated)

48934.1 Da

IEP (calculated)

7.007

GRAVY (calculated)

-0.194

Length

449 amino acids

Sequence
(BLAST)

001: MASVALRNPN SRRFLPLSSK IYSSCRGSIS TQFSISPNDS TSSPPPTIPW WRSMGTFTRT KPHVNVGTIG HVDHGKTTLT AAITKVLAEE GKAKAVAFDE
101: IDKAPEEKKR GITIATAHVE YETAKRHYAH VDCPGHADYV KNMITGAAQM DGGILVVSAP DGPMPQTKEH ILLARQVGVP SLVCFLNKVD ATDDPELVDL
201: VEMELRELLS FYKFPGDEIP IIRGSALCAL QGTNEEIGKQ AILKLMDAVD EYIPDPVRQL DKPFLMPIED VFSIQGRGTV ATGRVEQGTI KVGEEVEILG
301: LTQSGPLKST VTGVEMFKKI LDQGQAGDNV GLLLRGLKRE DIQRGQVIAK PGTCKTYKRF EAEIYVLTKD EGGRHTAFVT NYRPQFYMRT ADVTGKVQLP
401: EEVKMVMPGD NVTAVFELIS AVPLEAGQRF ALREGGRTVG AGVVSKVIS

Best Arabidopsis Sequence Match ( AT4G02930.1 )
(BLAST)

001: MASVVLRNPS SKRLVPFSSQ IYSRCGASVT SSYSISHSIG GDDLSSSTFG TSSFWRSMAT FTRNKPHVNV GTIGHVDHGK TTLTAAITKV LAEEGKAKAI
101: AFDEIDKAPE EKKRGITIAT AHVEYETAKR HYAHVDCPGH ADYVKNMITG AAQMDGGILV VSGPDGPMPQ TKEHILLARQ VGVPSLVCFL NKVDVVDDPE
201: LLELVEMELR ELLSFYKFPG DDIPIIRGSA LSALQGTNDE IGRQAILKLM DAVDEYIPDP VRVLDKPFLM PIEDVFSIQG RGTVATGRIE QGVIKVGEEV
301: EILGLREGGV PLKSTVTGVE MFKKILDNGQ AGDNVGLLLR GLKREDIQRG MVIAKPGSCK TYKKFEAEIY VLTKDEGGRH TAFFSNYRPQ FYLRTADITG
401: KVELPENVKM VMPGDNVTAV FELIMPVPLE TGQRFALREG GRTVGAGVVS KVMT

Arabidopsis Description

TUFAElongation factor Tu, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9ZT91]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.