CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 4
mitochondrion 7

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
nucleus: 27291164
mitochondrion: 27780359

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 27780359 doi

G Mustafa, S Komatsu

Graduate School of Life and Environmental Science, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 27291164 doi

X Yin, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH67153	Soybean	nucleus	98.45	98.02
VIT_07s0104g00600.t01	Wine grape	mitochondrion	86.73	87.31
PGSC0003DMT400009804	Potato	mitochondrion	86.28	86.67
Solyc09g073000.2.1	Tomato	plastid	86.28	86.67
AT4G02930.1	Thale cress	mitochondrion	86.28	85.9
Solyc06g008940.2.1	Tomato	unclear	84.96	85.14
PGSC0003DMT400037909	Potato	plastid	84.73	84.92
Bra036234.1-P	Field mustard	mitochondrion	85.18	84.8
CDX90912	Canola	mitochondrion	84.73	84.55
CDY22085	Canola	mitochondrion	84.96	84.4
Bra000853.1-P	Field mustard	mitochondrion	84.51	84.33
CDY17978	Canola	mitochondrion	84.51	84.33
HORVU5Hr1G122350.1	Barley	cytosol	57.08	84.04
CDY21923	Canola	mitochondrion	84.51	83.77
GSMUA_Achr3P24830_001	Banana	mitochondrion	83.85	83.3
GSMUA_Achr8P06040_001	Banana	mitochondrion	83.63	83.08
Zm00001d034856_P003	Maize	mitochondrion	82.74	82.74
Os03t0851100-01	Rice	mitochondrion	82.3	82.12
EER90508	Sorghum	mitochondrion	82.08	81.9
KRH20931	Soybean	mitochondrion	81.19	81.56
TraesCS4A01G330400.1	Wheat	mitochondrion	78.32	78.32
TraesCS5D01G542300.1	Wheat	mitochondrion	77.88	78.05
Zm00001d012846_P005	Maize	mitochondrion	78.32	77.97
TraesCS5B01G545200.1	Wheat	mitochondrion	77.88	77.88
KRH11356	Soybean	mitochondrion	70.35	77.0
Zm00001d040673_P001	Maize	mitochondrion	19.03	75.44
TraesCS1B01G431000.1	Wheat	cytosol	66.37	75.0
TraesCS5B01G545300.2	Wheat	cytosol	63.27	71.86
CDY62618	Canola	endoplasmic reticulum, mitochondrion	47.79	57.91
KRH57147	Soybean	plastid	59.96	56.58
KRH54307	Soybean	mitochondrion, plastid	59.96	56.58
KRH63638	Soybean	endoplasmic reticulum, nucleus, plastid	59.96	56.46
KRH03857	Soybean	plastid	52.21	52.8
KRH33293	Soybean	plastid	27.21	52.34
KRH58241	Soybean	nucleus	27.65	27.96
KRH57863	Soybean	nucleus	27.65	27.96
KRH07098	Soybean	cytosol, mitochondrion, nucleus	27.65	27.96
KRH04781	Soybean	endoplasmic reticulum	27.65	27.96
KRG93959	Soybean	nucleus	27.65	27.96
KRH34904	Soybean	nucleus	27.43	27.68
KRH41785	Soybean	cytosol, nucleus	25.89	23.21
KRH60492	Soybean	cytosol	25.89	23.17
KRH42938	Soybean	cytosol	28.32	16.26
KRH59057	Soybean	cytosol	27.88	15.89

Protein Annotations

EntrezGene:100776891	MapMan:17.7.4.1	Gene3D:2.40.30.10	Gene3D:3.40.50.300	EMBL:ACUP02012113	InterPro:EFTU_2
InterPro:EFTu-like_2	EnsemblPlantsGene:GLYMA_19G153200	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003746	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0006412	GO:GO:0006414	GO:GO:0008135	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	InterPro:G_TR_CS
UniProt:I1N9E6	InterPro:IPR000795	EnsemblPlants:KRG95471	ProteinID:KRG95471	ProteinID:KRG95471.1	HAMAP:MF_00118_B
InterPro:P-loop_NTPase	PFAM:PF00009	PFAM:PF03143	PFAM:PF03144	PRINTS:PR00315	ScanProsite:PS00301
PFscan:PS51722	PANTHER:PTHR43721	PANTHER:PTHR43721:SF12	SUPFAM:SSF50447	SUPFAM:SSF50465	SUPFAM:SSF52540
InterPro:Small_GTP-bd_dom	InterPro:TF_GTP-bd_dom	TIGRFAMs:TIGR00231	TIGRFAMs:TIGR00485	InterPro:Transl_B-barrel_sf	InterPro:Transl_elong_EF1A/Init_IF2_C
InterPro:Transl_elong_EFTu/EF1A_C	InterPro:Transl_elong_EFTu/EF1A_bac/org	UniParc:UPI000233ED1B	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr19:+:41356355..41360718

Molecular Weight (calculated)

49112.2 Da

IEP (calculated)

6.865

GRAVY (calculated)

-0.148

Length

452 amino acids

Sequence
(BLAST)

001: MATLVLRNCS STSRRLFPLT SQIHSSFSRS PLSPLVFTND SASSSSSSTP NPWWRSMATF TRTKPHVNVG TIGHVDHGKT TLTAAITKVL ADEGKAKAVA
101: FDEIDKAPEE KKRGITIATA HVEYETAKRH YAHVDCPGHA DYVKNMITGA AQMDGGILVV SAPDGPMPQT KEHILLARQV GVPSLVCFLN KVDAVDDPEL
201: LELVEMELRE LLSFYKFPGD EIPIIRGSAL SALQGTNDEI GRQAILKLMD AVDEYIPDPV RQLDKPFLMP IEDVFSIQGR GTVATGRVEQ GIIKVGDEVE
301: VLGLMQGGPL KTTVTGVEMF KKILDQGQAG DNVGLLLRGL KREDIQRGQV IAKPGSVKTS KKFEAEIYVL TKDEGGRHTA FFSNYKPQFY LRTADVTGKV
401: ELPENVKMVM PGDNVTAVFE LISAVPLEAG QRFALREGGR TVGAGVVSKV LS

Best Arabidopsis Sequence Match ( AT4G02930.1 )
(BLAST)

001: MASVVLRNPS SKRLVPFSSQ IYSRCGASVT SSYSISHSIG GDDLSSSTFG TSSFWRSMAT FTRNKPHVNV GTIGHVDHGK TTLTAAITKV LAEEGKAKAI
101: AFDEIDKAPE EKKRGITIAT AHVEYETAKR HYAHVDCPGH ADYVKNMITG AAQMDGGILV VSGPDGPMPQ TKEHILLARQ VGVPSLVCFL NKVDVVDDPE
201: LLELVEMELR ELLSFYKFPG DDIPIIRGSA LSALQGTNDE IGRQAILKLM DAVDEYIPDP VRVLDKPFLM PIEDVFSIQG RGTVATGRIE QGVIKVGEEV
301: EILGLREGGV PLKSTVTGVE MFKKILDNGQ AGDNVGLLLR GLKREDIQRG MVIAKPGSCK TYKKFEAEIY VLTKDEGGRH TAFFSNYRPQ FYLRTADITG
401: KVELPENVKM VMPGDNVTAV FELIMPVPLE TGQRFALREG GRTVGAGVVS KVMT

Arabidopsis Description

TUFAElongation factor Tu, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9ZT91]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.