Factsheet for Os03t0851100-01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 9

Predictors

GFP

MS/MS

Papers

mitochondrion: 17383966

mitochondrion: 15276442
mitochondrion: 16429260
mitochondrion: 19010998
plastid: 21433289
mitochondrion: 23027867
extracellular: 23159799
mitochondrion: 23356873
extracellular: 25047395
plasma membrane: 27800704
plastid: 27992503

gfp PMID: 17383966 doi

KA Howell, K Cheng, MW Murcha, LE Jenkin, AH Millar, J Whelan

Australian Research Council Centre of Excellence in Plant Energy Biology, University of Western Australia, Perth, Western Australia 6009, Australia.

msms PMID: 15276442 doi

BK Kristensen, P Askerlund, NV Bykova, H Egsgaard, IM Møller

Risø National Laboratory, Plant Research Department, P.O. Box 49, DK-4000 Roskilde, Denmark.

msms PMID: 23027867 doi

G Liu, H Tian, YQ Huang, J Hu, YX Ji, SQ Li, YQ Feng, L Guo, YG Zhu

State Key Laboratory of Hybrid Rice, College of Life Sciences, Wuhan University, Wuhan 430072, China.

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 25047395 doi

JY Kim, J Wu, SJ Kwon, H Oh, SE Lee, SG Kim, Y Wang, GK Agrawal, R Rakwal, KY Kang, IP Ahn, BG Kim, ST Kim

Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang, South Korea.

msms PMID: 16429260 doi

KA Howell, AH Millar, J Whelan

ARC Centre of Excellence in Plant Energy Biology, CMS Building M310, University of Western Australia, 35 Stirling Hwy, Perth, WA 6009, Australia.

msms PMID: 23159799 doi

SG Kim, Y Wang, KH Lee, ZY Park, J Park, J Wu, SJ Kwon, YH Lee, GK Agrawal, R Rakwal, ST Kim, KY Kang

Plant Molecular Biology and Biotechnology Research Center, Gyeongsang National University, Jinju, 660-701, South Korea.

msms PMID: 19010998 doi

S Huang, NL Taylor, R Narsai, H Eubel, J Whelan, AH Millar

Australian Research Council Centre of Excellence in Plant Energy Biology, M316, University of Western Australia, Crawley, 6009 Western Australia, Australia.

msms PMID: 23356873 doi

S Huang, RP Jacoby, RN Shingaki-Wells, L Li, AH Millar

ARC Centre of Excellence in Plant Energy Biology and Centre for Comparative Analysis of Biomolecular Networks (CABiN), The University of Western Australia, Bayliss Building M316, 35 Stirling Highway, Crawley, WA, 6009, Australia.

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

msms PMID: 21433289 doi

S Reiland, J Grossmann, K Baerenfaller, P Gehrig, A Nunes-Nesi, AR Fernie, W Gruissem, S Baginsky

Department of Biology, Plant Biotechnology, ETH Zurich, Zurich, Switzerland.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER90508	Sorghum	mitochondrion	92.72	92.72
Zm00001d034856_P003	Maize	mitochondrion	91.83	92.04
HORVU5Hr1G122350.1	Barley	cytosol	60.49	89.25
TraesCS4A01G330400.1	Wheat	mitochondrion	88.96	89.16
TraesCS5B01G545200.1	Wheat	mitochondrion	88.96	89.16
TraesCS5D01G542300.1	Wheat	mitochondrion	88.08	88.47
GSMUA_Achr8P06040_001	Banana	mitochondrion	86.09	85.71
Zm00001d012846_P005	Maize	mitochondrion	83.44	83.26
VIT_07s0104g00600.t01	Wine grape	mitochondrion	82.12	82.85
KRG95471	Soybean	nucleus	82.12	82.3
Solyc09g073000.2.1	Tomato	plastid	81.68	82.22
PGSC0003DMT400009804	Potato	mitochondrion	81.46	82.0
KRH67153	Soybean	nucleus	81.68	81.5
Solyc06g008940.2.1	Tomato	unclear	81.02	81.37
PGSC0003DMT400037909	Potato	plastid	80.79	81.15
KRH20931	Soybean	mitochondrion	80.57	81.11
CDY22085	Canola	mitochondrion	80.57	80.22
Bra036234.1-P	Field mustard	mitochondrion	80.35	80.18
CDY17978	Canola	mitochondrion	80.13	80.13
CDX90912	Canola	mitochondrion	80.13	80.13
Bra000853.1-P	Field mustard	mitochondrion	80.13	80.13
AT4G02930.1	Thale cress	mitochondrion	80.13	79.96
CDY21923	Canola	mitochondrion	80.35	79.82
TraesCS1B01G431000.1	Wheat	cytosol	69.76	79.0
TraesCS5B01G545300.2	Wheat	cytosol	67.11	76.38
KRH11356	Soybean	mitochondrion	69.09	75.79
Zm00001d040673_P001	Maize	mitochondrion	18.98	75.44
VIT_17s0000g09140.t01	Wine grape	cytosol	23.62	66.88
VIT_05s0029g00030.t01	Wine grape	cytosol	18.54	64.12
Os02t0595700-01	Rice	plastid	56.51	54.82
CDY62618	Canola	endoplasmic reticulum, mitochondrion	45.03	54.69
VIT_12s0034g01800.t01	Wine grape	cytosol	26.05	31.98
Os03t0178000-02	Rice	cytosol	27.15	27.52
Os03t0177900-01	Rice	plasma membrane	27.15	27.52
Os03t0177500-01	Rice	cytosol	27.15	27.52
Os03t0177400-01	Rice	cytosol	27.15	27.52
Os02t0456500-01	Rice	cytosol	12.8	22.39
Os04t0270100-01	Rice	cytosol	21.41	20.73
Os01t0116600-01	Rice	cytosol	26.93	18.63
Os04t0596500-02	Rice	cytosol	26.49	18.29
Os04t0677800-02	Rice	cytosol	26.49	17.6

Protein Annotations

MapMan:17.7.4.1	Gene3D:2.40.30.10	Gene3D:3.40.50.300	EntrezGene:4334800	ProteinID:AAO20062.1	ProteinID:ABF99926.1
EMBL:AK102069	ProteinID:BAF13826.1	ProteinID:BAS87382.1	ProteinID:EAZ29323.1	InterPro:EFTU_2	InterPro:EFTu-like_2
GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003746	GO:GO:0003824
GO:GO:0003924	GO:GO:0005488	GO:GO:0005524	GO:GO:0005525	GO:GO:0005575	GO:GO:0005618
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0006412	GO:GO:0006414
GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009058	GO:GO:0009987
GO:GO:0016787	GO:GO:0019538	GO:GO:0030312	GO:GO:0046686	GO:GO:0050897	InterPro:G_TR_CS
InterPro:IPR000795	HAMAP:MF_00118_B	EnsemblPlantsGene:Os03g0851100	EnsemblPlants:Os03t0851100-01	InterPro:P-loop_NTPase	PFAM:PF00009
PFAM:PF03143	PFAM:PF03144	PRINTS:PR00315	ScanProsite:PS00301	PFscan:PS51722	PANTHER:PTHR43721
PANTHER:PTHR43721:SF12	UniProt:Q851Y8	SUPFAM:SSF50447	SUPFAM:SSF50465	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom
InterPro:TF_GTP-bd_dom	TIGRFAMs:TIGR00231	TIGRFAMs:TIGR00485	InterPro:Transl_B-barrel_sf	InterPro:Transl_elong_EF1A/Init_IF2_C	InterPro:Transl_elong_EFTu/EF1A_C
InterPro:Transl_elong_EFTu/EF1A_bac/org	UniParc:UPI0000002791	RefSeq:XP_015630440.1	SEG:seg	:	:

Description

Similar to Translational elongation factor EF-TuM. (Os03t0851100-01);Similar to Elongation factor Tu. (Os03t0851100-02)

Coordinates

chr3:-:35826423..35830202

Molecular Weight (calculated)

48426.5 Da

IEP (calculated)

6.447

GRAVY (calculated)

-0.061

Length

453 amino acids

Sequence
(BLAST)

001: MAAAAVLRSH GARRILSYPT LRAAVISGPT ALPDASAAAA AAPQQPPPLA GTLWARSMAT FTRTKPHVNV GTIGHVDHGK TTLTAAITKV LAEAGKAKAV
101: AFDEIDKAPE EKARGITIAT AHVEYETAKR HYAHVDCPGH ADYVKNMITG AAQMDGGILV VSAPDGPMPQ TKEHILLARQ VGVPSLVCFL NKVDAVDDPE
201: LLELVEMELR ELLSFYKFPG DEIPIIRGSA LSALQGTNDE IGKNAILKLM DAVDEYIPDP VRQLDKSFLM PIEDVFSIQG RGTVVTGRVE QGTIKTGEDV
301: EILGLTPSGP LKTTVTGVEM FKKILDHGEA GDNVGLLLRG LKRGDVQRGQ VVCKPGTVKT YQKFEAEIYV LTKDEGGRHT AFLSNYSPQF YFRTADVTGK
401: VVLPDGVEMV MPGDNVTAGF ELISPVPLEP GQRFALREGG RTVGAGVVSK VYS

Best Arabidopsis Sequence Match ( AT4G02930.1 )
(BLAST)

001: MASVVLRNPS SKRLVPFSSQ IYSRCGASVT SSYSISHSIG GDDLSSSTFG TSSFWRSMAT FTRNKPHVNV GTIGHVDHGK TTLTAAITKV LAEEGKAKAI
101: AFDEIDKAPE EKKRGITIAT AHVEYETAKR HYAHVDCPGH ADYVKNMITG AAQMDGGILV VSGPDGPMPQ TKEHILLARQ VGVPSLVCFL NKVDVVDDPE
201: LLELVEMELR ELLSFYKFPG DDIPIIRGSA LSALQGTNDE IGRQAILKLM DAVDEYIPDP VRVLDKPFLM PIEDVFSIQG RGTVATGRIE QGVIKVGEEV
301: EILGLREGGV PLKSTVTGVE MFKKILDNGQ AGDNVGLLLR GLKREDIQRG MVIAKPGSCK TYKKFEAEIY VLTKDEGGRH TAFFSNYRPQ FYLRTADITG
401: KVELPENVKM VMPGDNVTAV FELIMPVPLE TGQRFALREG GRTVGAGVVS KVMT

Arabidopsis Description

TUFAElongation factor Tu, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9ZT91]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.