Factsheet for Os04t0677800-02

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol, plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G592500.1	Wheat	cytosol	71.99	71.68
EES13106	Sorghum	cytosol	73.31	71.23
TraesCS2B01G591700.6	Wheat	cytosol	72.29	69.24
HORVU2Hr1G119310.19	Barley	cytosol	68.48	67.78
Zm00001d001827_P005	Maize	cytosol	68.62	67.34
TraesCS2D01G562000.1	Wheat	cytosol	72.58	60.74
Solyc03g119290.2.1	Tomato	cytosol	46.48	53.91
GSMUA_Achr4P05390_001	Banana	cytosol	53.08	53.24
CDY61091	Canola	cytosol	10.41	52.99
Solyc12g036410.1.1	Tomato	cytosol	44.28	51.36
Os04t0596500-02	Rice	cytosol	49.12	51.07
Os01t0116600-01	Rice	cytosol	48.97	50.99
CDX78392	Canola	cytosol	45.16	49.04
Bra006069.1-P	Field mustard	cytosol	45.16	48.89
CDX85751	Canola	cytosol	50.73	48.46
CDY40108	Canola	cytosol	50.73	48.12
CDX70362	Canola	cytosol	45.89	48.08
VIT_03s0017g00530.t01	Wine grape	cytosol	53.08	47.63
Bra028577.1-P	Field mustard	cytosol	50.73	47.4
KRH59057	Soybean	cytosol	53.81	46.28
AT5G10630.4	Thale cress	cytosol	49.85	45.76
KRH42938	Soybean	cytosol	52.79	45.74
Os02t0456500-01	Rice	cytosol	13.49	35.52
Os03t0177400-01	Rice	cytosol	22.43	34.23
Os03t0177500-01	Rice	cytosol	22.43	34.23
Os03t0177900-01	Rice	plasma membrane	22.43	34.23
Os03t0178000-02	Rice	cytosol	22.43	34.23
Os04t0270100-01	Rice	cytosol	21.85	31.84
Os03t0851100-01	Rice	mitochondrion	17.6	26.49
Os02t0595700-01	Rice	plastid	17.16	25.05

Protein Annotations

MapMan:16.8.1.2.7	MapMan:17.3.3.1.2	Gene3D:2.40.30.10	Gene3D:3.40.50.300	ProteinID:BAF16182.1	ProteinID:BAS91641.1
GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003746	GO:GO:0003824
GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0006412	GO:GO:0006414	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	InterPro:IPR000795	InterPro:IPR001876	EnsemblPlantsGene:Os04g0677800
EnsemblPlants:Os04t0677800-02	InterPro:P-loop_NTPase	PFAM:PF00009	PFAM:PF03143	PRINTS:PR00315	ScanProsite:PS01358
PFscan:PS50199	PFscan:PS51722	PANTHER:PTHR23115	PANTHER:PTHR23115:SF219	UniProt:Q0J905	SUPFAM:SSF50447
SUPFAM:SSF50465	SUPFAM:SSF52540	InterPro:TF_GTP-bd_dom	InterPro:Transl_B-barrel_sf	InterPro:Transl_elong_EF1A/Init_IF2_C	InterPro:Transl_elong_EFTu/EF1A_C
UniParc:UPI0000DD9349	InterPro:Znf_RanBP2	SEG:seg	:	:	:

Description

Similar to H0402C08.12 protein. (Os04t0677800-01);Translation elongation factor EFTu/EF1A, C-terminal domain containing protein. (Os04t0677800-02)

Coordinates

chr4:-:34626374..34631268

Molecular Weight (calculated)

74865.7 Da

IEP (calculated)

8.668

GRAVY (calculated)

-0.294

Length

682 amino acids

Sequence
(BLAST)

001: MFIPELDNRS DPQEPSRNPG IWQCTICEHG NDAKKKSCEQ CGVLRYFSLY FNNALEVDGR AKRRDKHYAV SVLARTLFSP SSAKSKDVVL SGGFKASRNA
101: TGSTRATLDA LHKTYMTRKE RHINIVPFKF DTPSPDDVVA TGLKSSRSFR KVDTDAPHVT EKRVMDNDSS TPEKDTTADS NLPVKSNEFG ESSESVSVGS
201: QNETLCLDHE LQHLSLERKS QKSKANIKKP VSSSLYKPEP WMLQHEDEGI PRQLNLAIVG HVDSGKSTLC GRLLHALGRI SKKQMHKYEK EAKEKGKGSF
301: AYAWAMDESA DERERGITMT VGVAYFDTKN YHVVLLDSPG HKDFVPNMIS GATQSDAAIL VIDASIGSFE AGMGINGIGQ TKEHSQLVRS FGVDNLIVVV
401: NKMDSVEYSK ERFNFIKSQL GAFLRSCGYK DSAVAWVPIS AMENENLMTT ASDTRLSSWY DGNCLLKAID TLPPPSRDVS KPLRLPICDV FSSHKLGQVA
501: IGGKVEVGAT RSGSKILVMP FGELAVVKTI ERNSSSCNLA RAGDNVAIGL QGIDPSHIMP GGVICHPDYP VSVASCLELK ILVLDITVPI LVGLQFELHI
601: HHAKVSASMV KILSLLEQKT GKASKKIPRF LTSRQTAVIE VKLEKEVCVE EFSNLKALGR VFLRSQGNTI AVGIVSRVRE QA

Best Arabidopsis Sequence Match ( AT5G10630.4 )
(BLAST)

001: MPRKGLSNFD DYDDGFDDDD DAFDYDYDVD IDEHEEEAAA EPKEEIAKTQ GLWRCAICTY DNVETMFVCD ICGVLRHPVA GNQSINKNTD VFYAVESRCK
101: EPVVSKLAKS LFGSVPSNKP KRAVLCLPEH TNLVMEQGPL PGISRGNIHD LYKAFSSKNS CVSIAPFKFD APSPDDLVSN GLTSSKTGPK GSGDASMRQK
201: EKQDSVEQKP LKKGGDSSET SSRGRHDKLD DKGGAGGIKS GKSLPKAKAD MSNETSSSSK YMETSESLTG TMNKMSLIGE TENSSDIKIR GPKSQSKHKP
301: EEWMLLDKES DALSQLNLAI VGHVDSGKST LSGRLLHLLG RISQKQMHKY EKEAKLQGKG SFAYAWALDE SAEERERGIT MTVAVAYFNS KRHHVVLLDS
401: PGHKDFVPNM IAGATQADAA ILVIDASVGA FEAGFDNLKG QTREHARVLR GFGVEQVIVA INKMDIVGYS KERFDLIKQH VGSFLQSCRF KDSSLTWIPL
501: SAMENQNLVA APSDNRLSSW YQGPCLLDAV DSVKSPDRDV SKPLLMPICD AVRSTSQGQV SACGKLEAGA VRPGSKVMVM PSGDQGTIRS LERDSQACTI
601: ARAGDNVALA LQGIDANQVM AGDVLCHPDF PVSVATHLEL MVLVLEGATP ILLGSQLEFH VHHAKEAATV VKLVAMLDPK TGQPTKKSPR CLTAKQSAML
701: EVSLQNPVCV ETFSESRALG RVFLRSSGRT VAMGKVTRII QDS

Arabidopsis Description

Translation elongation factor EF1A/initiation factor IF2gamma family protein [Source:TAIR;Acc:AT5G10630]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.