CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY09214	Canola	cytosol	26.87	22.5
GSMUA_Achr1P00050_001	Banana	cytosol	52.99	16.14
CDY06287	Canola	cytosol	25.37	14.98
CDX78392	Canola	cytosol	68.66	14.65
CDX70362	Canola	cytosol	68.66	14.13
CDY06289	Canola	cytosol	25.37	13.28
Solyc03g119290.2.1	Tomato	cytosol	55.97	12.76
Solyc12g036410.1.1	Tomato	cytosol	55.22	12.59
CDX85751	Canola	cytosol	66.42	12.46
CDY40108	Canola	cytosol	66.42	12.38
CDY67375	Canola	cytosol	25.37	12.23
AT5G10630.4	Thale cress	cytosol	66.42	11.98
GSMUA_Achr4P05390_001	Banana	cytosol	58.96	11.62
Os04t0596500-02	Rice	cytosol	54.48	11.13
Os01t0116600-01	Rice	cytosol	52.99	10.84
EES12776	Sorghum	cytosol	53.73	10.62
TraesCS2D01G443300.1	Wheat	cytosol	53.73	10.59
TraesCS2A01G444100.1	Wheat	cytosol	52.99	10.43
TraesCS2B01G465300.1	Wheat	cytosol	52.99	10.43
Os04t0677800-02	Rice	cytosol	52.99	10.41
VIT_03s0017g00530.t01	Wine grape	cytosol	56.72	10.0
EES13106	Sorghum	cytosol	52.24	9.97
Zm00001d001827_P005	Maize	cytosol	51.49	9.93
TraesCS2A01G592500.1	Wheat	cytosol	50.75	9.93
KRH59057	Soybean	cytosol	58.21	9.84
HORVU2Hr1G119310.19	Barley	cytosol	50.0	9.72
KRH42938	Soybean	cytosol	56.72	9.66
HORVU2Hr1G102800.6	Barley	cytosol, plastid	53.73	9.54
TraesCS2B01G591700.6	Wheat	cytosol	50.0	9.41
CDX95108	Canola	cytosol, extracellular	32.84	9.03
Zm00001d026213_P001	Maize	cytosol	54.48	8.8
CDX88757	Canola	cytosol	25.37	8.48
CDY22711	Canola	cytosol	26.87	8.43
CDY22710	Canola	cytosol	26.87	8.43
TraesCS2D01G562000.1	Wheat	cytosol	50.75	8.34
CDX96737	Canola	cytosol	32.09	8.3
CDY34479	Canola	cytosol	25.37	7.94
CDY61938	Canola	cytosol	25.37	7.94
CDY09211	Canola	cytosol	25.37	7.94
CDY10804	Canola	cytosol	25.37	7.94
CDX83874	Canola	endoplasmic reticulum	30.6	7.92
CDX93604	Canola	cytosol	25.37	7.39
CDY19192	Canola	cytosol	29.85	7.37
CDY21721	Canola	cytosol	29.85	6.94
CDX81859	Canola	endoplasmic reticulum, golgi, plasma membrane	29.85	6.85
CDY26187	Canola	golgi, vacuole	29.85	6.84
CDY58828	Canola	cytosol	26.87	6.34
CDX90912	Canola	mitochondrion	20.15	5.96
CDY17978	Canola	mitochondrion	20.15	5.96
CDY22085	Canola	mitochondrion	20.15	5.93
CDY21923	Canola	mitochondrion	20.15	5.92
CDX70032	Canola	cytosol	14.93	5.81
CDX82758	Canola	plastid	7.46	3.52
CDX98668	Canola	plastid	6.72	3.25
CDX94002	Canola	plastid	6.72	3.18
CDX78988	Canola	plastid	6.72	2.98
CDY49485	Canola	plastid	7.46	2.92
CDY49022	Canola	plastid	7.46	2.92
CDY54570	Canola	plastid	6.72	2.88
CDY62618	Canola	endoplasmic reticulum, mitochondrion	7.46	2.68
CDY31442	Canola	plastid	5.97	2.56
CDY06290	Canola	cytosol	0.0	0.0
CDY06288	Canola	cytosol	0.0	0.0
CDY69678	Canola	cytosol	0.0	0.0
CDY67376	Canola	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:CDY61091	EnsemblPlantsGene:GSBRNA2T00030571001	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0016787	InterPro:IPR000795	InterPro:P-loop_NTPase
InterPro:TF_GTP-bd_dom	PANTHER:PTHR23115	PANTHER:PTHR23115:SF219	PFAM:PF00009	ProteinID:CDY61091	ProteinID:CDY61091.1
SUPFAM:SSF52540	UniParc:UPI0004EE9FEC	UniProt:A0A078JA84	MapMan:35.2	:	:

Description

BnaC06g41590DBnaC06g41590D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JA84]

Coordinates

chrLK033955:+:7437..7976

Molecular Weight (calculated)

15233.3 Da

IEP (calculated)

9.042

GRAVY (calculated)

-0.474

Length

134 amino acids

Sequence
(BLAST)

001: MQSGCRLDML IPGKGSFAYA WALDENAEER ERGITMTMAF AYFNTKMHHV VLLDSPRTHR FCSKHDSRSN ASRCCDSGHK GQTREHARVL RGFGVEQVIV
101: AVNKMDIVAY SKDKFDLIKQ QIAGSFPQSC RFKE

Best Arabidopsis Sequence Match ( AT5G10630.1 )
(BLAST)

001: MPRKGLSNFD DYDDGFDDDD DAFDYDYDVD IDEHEEAAAE PKEEIAKTQG LWRCAICTYD NVETMFVCDI CGVLRHPVAG NQSINKNTAP FKFDAPSPDD
101: LVSNGLTSSK TGPKGSGDAS MRQKEKQDSV EQKPLKKGGD SSETSSRGRH DKLDDKGGAG GIKSGKSLPK AKADMSNETS SSSKYMETSE SLTGTMNKMS
201: LIGETENSSD IKIRGPKSQS KHKPEEWMLL DKESDALSQL NLAIVGHVDS GKSTLSGRLL HLLGRISQKQ MHKYEKEAKL QGKGSFAYAW ALDESAEERE
301: RGITMTVAVA YFNSKRHHVV LLDSPGHKDF VPNMIAGATQ ADAAILVIDA SVGAFEAGFD NLKGQTREHA RVLRGFGVEQ VIVAINKMDI VGYSKERFDL
401: IKQHVGSFLQ SCRFKDSSLT WIPLSAMENQ NLVAAPSDNR LSSWYQGPCL LDAVDSVKSP DRDVSKPLLM PICDAVRSTS QGQVSACGKL EAGAVRPGSK
501: VMVMPSGDQG TIRSLERDSQ ACTIARAGDN VALALQGIDA NQVMAGDVLC HPDFPVSVAT HLELMVLVLE GATPILLGSQ LEFHVHHAKE AATVVKLVAM
601: LDPKTGQPTK KSPRCLTAKQ SAMLEVSLQN PVCVETFSES RALGRVFLRS SGRTVAMGKV TRIIQDS

Arabidopsis Description

Translation elongation factor EF1A/initiation factor IF2gamma family protein [Source:TAIR;Acc:AT5G10630]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.