CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX98668	Canola	plastid	86.75	94.58
GSMUA_AchrUn_...	Banana	cytosol	56.62	93.44
CDX82758	Canola	plastid	87.75	93.31
CDX94002	Canola	plastid	87.42	93.29
CDY54570	Canola	plastid	92.72	89.74
CDY31442	Canola	plastid	92.05	89.1
CDY49485	Canola	plastid	89.07	78.66
CDY49022	Canola	plastid	89.07	78.43
Bra013458.1-P	Field mustard	plastid	99.01	63.62
AT4G20360.1	Thale cress	plastid	93.71	59.45
KRH03857	Soybean	plastid	78.15	52.8
Solyc06g071790.2.1	Tomato	nucleus, plastid	77.81	52.22
KRH57147	Soybean	plastid	81.13	51.15
VIT_17s0000g09370.t01	Wine grape	plastid	81.79	50.82
Solyc03g112150.1.1	Tomato	plastid	77.81	49.27
PGSC0003DMT400092196	Potato	plastid	77.81	49.27
PGSC0003DMT400046837	Potato	cytosol, extracellular, plastid	77.15	48.85
TraesCS6D01G193000.1	Wheat	nucleus, plastid	73.84	47.45
TraesCS6B01G238600.1	Wheat	plastid	73.51	47.44
Zm00001d017092_P001	Maize	plastid	72.85	47.31
TraesCS6A01G209800.1	Wheat	plastid	73.51	47.23
Os02t0595700-01	Rice	plastid	72.52	46.9
Zm00001d050969_P001	Maize	plastid	72.19	46.78
EES05366	Sorghum	plastid	71.85	46.57
HORVU6Hr1G053680.5	Barley	plastid	73.51	43.19
GSMUA_Achr6P06690_001	Banana	mitochondrion, plastid	38.41	37.06
CDX90912	Canola	mitochondrion	51.99	34.66
CDY22085	Canola	mitochondrion	51.99	34.51
CDY17978	Canola	mitochondrion	51.66	34.44
CDY21923	Canola	mitochondrion	51.32	33.99
CDY62618	Canola	endoplasmic reticulum, mitochondrion	36.09	29.22
CDX70032	Canola	cytosol	22.19	19.48
CDY67376	Canola	cytosol	6.95	18.26
CDY06288	Canola	cytosol	6.95	18.26
CDY69678	Canola	cytosol	6.95	18.26
CDY06290	Canola	cytosol	6.95	18.26
CDY22710	Canola	cytosol	21.52	15.22
CDY22711	Canola	cytosol	21.52	15.22
CDX95108	Canola	cytosol, extracellular	23.84	14.78
CDY09211	Canola	cytosol	20.86	14.72
CDY61938	Canola	cytosol	20.86	14.72
CDY34479	Canola	cytosol	20.86	14.72
CDY10804	Canola	cytosol	20.86	14.72
CDX88757	Canola	cytosol	19.21	14.46
CDX93604	Canola	cytosol	20.86	13.7
CDY58828	Canola	cytosol	21.52	11.44
CDX78392	Canola	cytosol	23.51	11.31
CDY67375	Canola	cytosol	10.26	11.15
CDX70362	Canola	cytosol	23.84	11.06
CDX96737	Canola	cytosol	18.87	11.0
CDX83874	Canola	endoplasmic reticulum	18.54	10.81
CDX85751	Canola	cytosol	24.17	10.22
CDY19192	Canola	cytosol	18.21	10.13
CDX81859	Canola	endoplasmic reticulum, golgi, plasma membrane	19.21	9.93
CDY21721	Canola	cytosol	18.87	9.9
CDY40108	Canola	cytosol	23.51	9.87
CDY26187	Canola	golgi, vacuole	18.21	9.4
CDY06289	Canola	cytosol	7.95	9.38
CDY61091	Canola	cytosol	2.98	6.72
CDY06287	Canola	cytosol	3.97	5.29
CDY09214	Canola	cytosol	2.65	5.0

Protein Annotations

MapMan:17.7.4.1	Gene3D:2.40.30.10	GO:A0A078CUY0	EnsemblPlants:CDX78988	ProteinID:CDX78988	ProteinID:CDX78988.1
InterPro:EFTU_2	InterPro:EFTu-like_2	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005525
EnsemblPlantsGene:GSBRNA2T00131508001	InterPro:G_TR_CS	PFAM:PF03143	PFAM:PF03144	ScanProsite:PS00301	PANTHER:PTHR43721
PANTHER:PTHR43721:SF13	SUPFAM:SSF50447	SUPFAM:SSF50465	InterPro:Transl_B-barrel_sf	InterPro:Transl_elong_EF1A/Init_IF2_C	InterPro:Transl_elong_EFTu/EF1A_C
UniParc:UPI0004EF02BB	SEG:seg	:	:	:	:

Description

BnaA01g10550D

Coordinates

chrLK031816:+:1235057..1236664

Molecular Weight (calculated)

32891.7 Da

IEP (calculated)

9.204

GRAVY (calculated)

-0.115

Length

302 amino acids

Sequence
(BLAST)

001: MAISSPAYSR LICSYSSPSP SLSPAISTSV KLNLSSSFLP SYSLSTTPSA SQSPRRSFTV RAARGNVAKK YDEIDAAPEE RARGITINTA TIYELMDAVD
101: SYIPIPQRQT ELPFLLAVED VFSITGRGTV ATGRVERGTV KVGETVDLVG LRETRNYTVT GVEMFQKILD EALAGDNVGL LLRGIQKADI QRGMVLAKPG
201: SITPHTKFEA IVYVLKKEEG GRHSPFFAGY RPQFYMRTTD VTGKVTKIMN DKDEESKMVM PGDRVKIVVE LIVPVACEQG MRFAIREGGK TVGAGVIQSI
301: IE

Best Arabidopsis Sequence Match ( AT4G02930.1 )
(BLAST)

001: MASVVLRNPS SKRLVPFSSQ IYSRCGASVT SSYSISHSIG GDDLSSSTFG TSSFWRSMAT FTRNKPHVNV GTIGHVDHGK TTLTAAITKV LAEEGKAKAI
101: AFDEIDKAPE EKKRGITIAT AHVEYETAKR HYAHVDCPGH ADYVKNMITG AAQMDGGILV VSGPDGPMPQ TKEHILLARQ VGVPSLVCFL NKVDVVDDPE
201: LLELVEMELR ELLSFYKFPG DDIPIIRGSA LSALQGTNDE IGRQAILKLM DAVDEYIPDP VRVLDKPFLM PIEDVFSIQG RGTVATGRIE QGVIKVGEEV
301: EILGLREGGV PLKSTVTGVE MFKKILDNGQ AGDNVGLLLR GLKREDIQRG MVIAKPGSCK TYKKFEAEIY VLTKDEGGRH TAFFSNYRPQ FYLRTADITG
401: KVELPENVKM VMPGDNVTAV FELIMPVPLE TGQRFALREG GRTVGAGVVS KVMT

Arabidopsis Description

TUFAElongation factor Tu, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9ZT91]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.