Factsheet for Zm00001d017092_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 20089766
extracellular: 20408568
plastid: 22065420
plastid: 23198870

msms PMID: 20089766 doi

G Friso, W Majeran, M Huang, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d050969_P001	Maize	plastid	96.56	96.35
EES05366	Sorghum	plastid	96.34	96.14
Os02t0595700-01	Rice	plastid	90.11	89.72
GSMUA_AchrUn_...	Banana	cytosol	35.05	89.07
TraesCS6B01G238600.1	Wheat	plastid	89.46	88.89
TraesCS6A01G209800.1	Wheat	plastid	89.68	88.72
TraesCS6D01G193000.1	Wheat	nucleus, plastid	89.68	88.72
CDX82758	Canola	plastid	47.74	78.17
Solyc06g071790.2.1	Tomato	nucleus, plastid	75.05	77.56
HORVU6Hr1G053680.5	Barley	plastid	84.95	76.85
Bra013458.1-P	Field mustard	plastid	77.63	76.81
Bra033753.1-P	Field mustard	plastid	78.28	76.79
PGSC0003DMT400092196	Potato	plastid	78.71	76.73
Solyc03g112150.1.1	Tomato	plastid	78.06	76.1
PGSC0003DMT400046837	Potato	cytosol, extracellular, plastid	78.06	76.1
Bra038805.1-P	Field mustard	plastid	77.63	76.0
AT4G20360.1	Thale cress	plastid	76.99	75.21
CDX98668	Canola	plastid	44.73	75.09
CDY49022	Canola	plastid	55.27	74.93
VIT_17s0000g09370.t01	Wine grape	plastid	78.28	74.9
CDY49485	Canola	plastid	55.05	74.85
Bra020926.1-P	Field mustard	plastid	68.6	74.71
GSMUA_Achr6P06690_001	Banana	mitochondrion, plastid	49.68	73.8
CDX94002	Canola	plastid	44.52	73.14
CDX78988	Canola	plastid	47.31	72.85
CDY54570	Canola	plastid	48.39	72.12
CDY31442	Canola	plastid	47.96	71.47
KRH33293	Soybean	plastid	32.04	63.4
Zm00001d034856_P003	Maize	mitochondrion	56.56	58.19
Zm00001d012846_P005	Maize	mitochondrion	53.33	54.63
Zm00001d040673_P001	Maize	mitochondrion	12.26	50.0
Zm00001d037882_P001	Maize	cytosol	12.04	30.27
Zm00001d009887_P001	Maize	cytosol	9.46	30.14
Zm00001d006596_P001	Maize	cytosol	26.02	27.07
Zm00001d021788_P001	Maize	cytosol, extracellular, plasma membrane, plastid	26.02	27.07
Zm00001d036904_P001	Maize	cytosol	25.38	26.4
Zm00001d046449_P003	Maize	cytosol	25.38	26.4
Zm00001d037875_P014	Maize	cytosol	25.59	26.39
Zm00001d037877_P014	Maize	cytosol	25.59	26.39
Zm00001d009868_P015	Maize	cytosol	25.59	26.39
Zm00001d009870_P008	Maize	cytosol	25.38	26.16
Zm00001d037873_P010	Maize	cytosol	25.38	26.16
Zm00001d037905_P010	Maize	cytosol	25.38	26.16
Zm00001d004172_P005	Maize	cytosol	25.38	21.81
Zm00001d025100_P005	Maize	cytosol	24.3	20.14
Zm00001d001827_P005	Maize	cytosol	24.52	16.4
Zm00001d026213_P001	Maize	cytosol	26.45	14.82

Protein Annotations

EntrezGene:100284040	MapMan:17.7.4.1	Gene3D:2.40.30.10	Gene3D:3.40.50.300	ProteinID:AQK72260.1	UniProt:B6TPG0
InterPro:EFTU_2	InterPro:EFTu-like_2	EMBL:EU966875	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003746	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006412	GO:GO:0006414	GO:GO:0008135
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538
InterPro:G_TR_CS	InterPro:IPR000795	HAMAP:MF_00118_B	InterPro:P-loop_NTPase	PFAM:PF00009	PFAM:PF03143
PFAM:PF03144	PRINTS:PR00315	ScanProsite:PS00301	PFscan:PS51722	PANTHER:PTHR43721	PANTHER:PTHR43721:SF6
SUPFAM:SSF50447	SUPFAM:SSF50465	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:TF_GTP-bd_dom	TIGRFAMs:TIGR00231
TIGRFAMs:TIGR00485	InterPro:Transl_B-barrel_sf	InterPro:Transl_elong_EF1A/Init_IF2_C	InterPro:Transl_elong_EFTu/EF1A_C	InterPro:Transl_elong_EFTu/EF1A_bac/org	UniParc:UPI000182E0AB
EnsemblPlantsGene:Zm00001d017092	EnsemblPlants:Zm00001d017092_P001	EnsemblPlants:Zm00001d017092_T001	SEG:seg	:	:

Description

Elongation factor Tu

Coordinates

chr5:+:185199585..185201232

Molecular Weight (calculated)

50540.0 Da

IEP (calculated)

6.437

GRAVY (calculated)

-0.165

Length

465 amino acids

Sequence
(BLAST)

001: MASLTSASTS LLFPQASSSR SRVRLSTSLG FSAQPARLRS RAAAGGQRRG SLLVVRAARG KFERTKPHVN IGTIGHVDHG KTTLTAALTM VLASVGGSAP
101: KKYDEIDAAP EERARGITIN TATVEYETET RHYAHVDCPG HADYVKNMIT GAAQMDGAIL VVSGADGPMP QTKEHILLAK QVGVPKIVVF LNKKDMVDDE
201: ELLELVELEV RELLSNYEYD GDEVPIVAGS ALKALEALMG NPTLKRGDDE WVDCIFKLVD SVDSYIPVPQ RQTDLPFLLA VEDVFSITGR GTVATGRIER
301: GTVKIGDTVD IVGIRDTRNC TVTGVEMFQK TMDDAMAGDN VGLLLRGMQK DDIERGMVLA KPGSITPHTK FEAVVYVLKK EEGGRHSPFF PGYRPQFYMR
401: TTDVTGNVTV IMNDKDEEAK MCMPGDRIKM VVQLIQPVAC EQGMRFAIRE GGKTVGAGVI NKIIE

Best Arabidopsis Sequence Match ( AT4G20360.2 )
(BLAST)

001: MAISAPAACS SSSRILCSYS SPSPSLCPAI STSGKLKTLT LSSSFLPSYS LTTTSASQST RRSFTVRAAR GKFERKKPHV NIGTIGHVDH GKTTLTAALT
101: MALASIGSSV AKKYDEIDAA PEERARGITI NTATVEYETE NRHYAHVDCP GHADYVKNMI TGAAQMDGAI LVVSGADGPM PQTKEHILLA KQVGVPDMVV
201: FLNKEDQVDD AELLELVELE VRELLSSYEF NGDDIPIISG SALLAVETLT ENPKVKRGDN KWVDKIYELM DAVDDYIPIP QRQTELPFLL AVEDVFSITG
301: RGTVATGRVE RGTVKVGETV DLVGLRETRS YTVTGVEMFQ KILDEALAGD NVGLLLRGIQ KADIQRGMVL AKPGSITPHT KFEAIIYVLK KEEGGRHSPF
401: FAGYRPQFYM RTTDVTGKVT KIMNDKDEES KMVMPGDRVK IVVELIVPVA CEQGMRFAIR EGGKTVGAGV IGTILE

Arabidopsis Description

TUFAElongation factor Tu, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P17745]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.