Factsheet for Zm00001d021788_P001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, plastid, extracellular, cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular, plasma membrane, plastid
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

extracellular: 20408568
plastid: 22065420
plasma membrane: 23353019

msms PMID: 23353019 doi

D Hopff, S Wienkoop, S Lüthje

University of Hamburg, Biocenter Klein Flottbek and Botanical Garden, Plant Physiology, Ohnhorststraße 18, D-22609 Hamburg, Germany.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER97380	Sorghum	cytosol	99.33	99.33
Zm00001d006596_P001	Maize	cytosol	99.33	99.33
Zm00001d036904_P001	Maize	cytosol	95.97	95.97
Zm00001d046449_P003	Maize	cytosol	95.97	95.97
Zm00001d037882_P001	Maize	cytosol	39.37	95.14
Zm00001d037905_P010	Maize	cytosol	95.97	95.12
Zm00001d037873_P010	Maize	cytosol	95.97	95.12
Zm00001d009870_P008	Maize	cytosol	95.97	95.12
Zm00001d009868_P015	Maize	cytosol	95.97	95.12
TraesCS2A01G083300.1	Wheat	cytosol, golgi	95.08	95.08
Zm00001d037877_P014	Maize	cytosol	95.75	94.9
Zm00001d037875_P014	Maize	cytosol	95.75	94.9
TraesCS2D01G080900.1	Wheat	cytosol, golgi, unclear	94.85	94.85
TraesCS2D01G080800.1	Wheat	cytosol	94.85	94.85
TraesCS2B01G097300.1	Wheat	cytosol	94.85	94.85
TraesCS2B01G097100.1	Wheat	cytosol	94.85	94.85
TraesCS2A01G083000.1	Wheat	cytosol	94.85	94.85
HORVU2Hr1G013680.1	Barley	cytosol, plasma membrane	94.63	94.63
HORVU0Hr1G017020.1	Barley	cytosol	94.63	94.63
Zm00001d009887_P001	Maize	cytosol	29.31	89.73
Zm00001d004172_P005	Maize	cytosol	36.47	30.13
Zm00001d034856_P003	Maize	mitochondrion	27.96	27.65
Zm00001d025100_P005	Maize	cytosol	33.78	26.92
Zm00001d017092_P001	Maize	plastid	27.07	26.02
Zm00001d050969_P001	Maize	plastid	27.07	25.97
Zm00001d012846_P005	Maize	mitochondrion	25.73	25.33
Zm00001d001827_P005	Maize	cytosol	34.45	22.16
Zm00001d040673_P001	Maize	mitochondrion	5.59	21.93
Zm00001d026213_P001	Maize	cytosol	34.45	18.55

Protein Annotations

EntrezGene:100284707	MapMan:17.5.1.1	Gene3D:2.40.30.10	Gene3D:3.40.50.300	UniProt:B6TWN7	InterPro:EFTu-like_2
EMBL:EU969402	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003746
GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006412	GO:GO:0006414	GO:GO:0008135	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	InterPro:G_TR_CS
InterPro:IPR000795	HAMAP:MF_00118_A	ProteinID:ONM58453.1	InterPro:P-loop_NTPase	PFAM:PF00009	PFAM:PF03143
PFAM:PF03144	PRINTS:PR00315	ScanProsite:PS00301	PFscan:PS51722	PANTHER:PTHR23115	PANTHER:PTHR23115:SF230
SUPFAM:SSF50447	SUPFAM:SSF50465	SUPFAM:SSF52540	InterPro:TF_GTP-bd_dom	TIGRFAMs:TIGR00483	InterPro:Transl_B-barrel_sf
InterPro:Transl_elong_EF1A/Init_IF2_C	InterPro:Transl_elong_EF1A_euk/arc	InterPro:Transl_elong_EFTu/EF1A_C	UniParc:UPI000182E130	EnsemblPlantsGene:Zm00001d021788	EnsemblPlants:Zm00001d021788_P001
EnsemblPlants:Zm00001d021788_T001	SEG:seg	:	:	:	:

Description

Elongation factor 1-alpha

Coordinates

chr7:+:162999143..163002120

Molecular Weight (calculated)

49285.8 Da

IEP (calculated)

9.568

GRAVY (calculated)

-0.317

Length

447 amino acids

Sequence
(BLAST)

001: MGKEKVHINI VVIGHVDSGK STTTGHLIYK LGGIDKRVIE RFEKEAAEMN KRSFKYAWVL DKLKAERERG ITIDIALWKF ETTKYYCTVI DAPGHRDFIK
101: NMITGTSQAD CAVLIIDSTT GGFEAGISKD GQTREHALLA FTLGVRQMIC CCNKMDATTP KYSKARYDEI VKEVGSYLKK VGYNPDKIPF VPISGFEGDN
201: MIERSTNLDW YKGPTLLEAL DQINEPKRPS DKPLRLPLQD VYKIGGIGTV PVGRVETGLL KPGMVVTFAP TGLTTEVKSV EMHHETMQEA LPGDNVGFNV
301: KNVAVKDLKR GYVASNSKDD PAKEAASFTA QVIIMNHPGQ IGNGYAPVLD CHTSHIAVKF SELLTKIDRR SGKELESAPK FLKNGDAGFV KMIPTKPMVV
401: ETFSEYPPLG RFAVRDMRQT VAVGVIKSVE KKDPTGAKVT KAAAKKK

Best Arabidopsis Sequence Match ( AT1G07930.1 )
(BLAST)

001: MGKEKFHINI VVIGHVDSGK STTTGHLIYK LGGIDKRVIE RFEKEAAEMN KRSFKYAWVL DKLKAERERG ITIDIALWKF ETTKYYCTVI DAPGHRDFIK
101: NMITGTSQAD CAVLIIDSTT GGFEAGISKD GQTREHALLA FTLGVKQMIC CCNKMDATTP KYSKARYDEI IKEVSSYLKK VGYNPDKIPF VPISGFEGDN
201: MIERSTNLDW YKGPTLLEAL DQINEPKRPS DKPLRLPLQD VYKIGGIGTV PVGRVETGMI KPGMVVTFAP TGLTTEVKSV EMHHESLLEA LPGDNVGFNV
301: KNVAVKDLKR GYVASNSKDD PAKGAANFTS QVIIMNHPGQ IGNGYAPVLD CHTSHIAVKF SEILTKIDRR SGKEIEKEPK FLKNGDAGMV KMTPTKPMVV
401: ETFSEYPPLG RFAVRDMRQT VAVGVIKSVD KKDPTGAKVT KAAVKKGAK

Arabidopsis Description

A1Elongation factor 1-alpha 4 [Source:UniProtKB/Swiss-Prot;Acc:Q8GTY0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.