Factsheet for Zm00001d009887_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d005029_P001
Zm00001d052380_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G07920.1	Zm00001d005029_P001	AT3G54220.1	19228333
AT1G07920.1	Zm00001d052380_P001	AT3G54220.1	19228333
AT1G07930.1	Zm00001d005029_P001	AT3G54220.1	19228333
AT1G07930.1	Zm00001d052380_P001	AT3G54220.1	19228333

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr2P19000_001	Banana	cytosol	46.58	88.31
HORVU5Hr1G051280.1	Barley	cytosol	59.59	83.65
CDY09214	Canola	cytosol	89.73	81.88
GSMUA_Achr5P24440_001	Banana	cytosol	66.44	76.38
VIT_19s0014g04110.t01	Wine grape	cytosol	63.01	76.03
TraesCS2D01G320300.1	Wheat	cytosol, nucleus, plastid	76.71	70.44
Zm00001d037882_P001	Maize	cytosol	88.36	69.73
Bra031601.1-P	Field mustard	cytosol	89.73	66.16
GSMUA_Achr10P...	Banana	cytosol, plastid	89.04	60.47
CDY06287	Canola	cytosol	76.03	48.9
CDY06289	Canola	cytosol	76.03	43.36
CDY67375	Canola	cytosol	76.03	39.93
GSMUA_Achr6P02020_001	Banana	mitochondrion	89.73	37.86
TraesCS2D01G320500.1	Wheat	cytosol	78.77	31.17
HORVU4Hr1G056740.1	Barley	cytosol	89.73	29.31
KRG93959	Soybean	nucleus	89.73	29.31
KRH07098	Soybean	cytosol, mitochondrion, nucleus	89.73	29.31
KRH58241	Soybean	nucleus	89.73	29.31
Os03t0177400-01	Rice	cytosol	89.73	29.31
Os03t0177500-01	Rice	cytosol	89.73	29.31
Os03t0177900-01	Rice	plasma membrane	89.73	29.31
Os03t0178000-02	Rice	cytosol	89.73	29.31
PGSC0003DMT400050663	Potato	cytosol	89.73	29.31
Solyc11g069700.1.1	Tomato	nucleus	89.73	29.31
TraesCS4A01G107600.1	Wheat	cytosol	89.73	29.31
TraesCS4A01G107700.1	Wheat	cytosol	89.73	29.31
TraesCS4B01G196900.1	Wheat	golgi	89.73	29.31
TraesCS4D01G197100.1	Wheat	cytosol	89.73	29.31
TraesCS4D01G197200.1	Wheat	cytosol	89.73	29.31
TraesCS5A01G415400.1	Wheat	cytosol	89.73	29.31
TraesCS5A01G415600.1	Wheat	cytosol	89.73	29.31
TraesCS5B01G418100.1	Wheat	cytosol	89.73	29.31
TraesCS5B01G418200.1	Wheat	cytosol	89.73	29.31
TraesCS5D01G423300.1	Wheat	cytosol	89.73	29.31
TraesCS5D01G423400.1	Wheat	cytosol	89.73	29.31
VIT_08s0040g02330.t01	Wine grape	cytosol	89.73	29.31
Zm00001d021788_P001	Maize	cytosol, extracellular, plasma membrane, plastid	89.73	29.31
Zm00001d036904_P001	Maize	cytosol	89.73	29.31
Zm00001d046449_P003	Maize	cytosol	89.73	29.31
Zm00001d009868_P015	Maize	cytosol	90.41	29.27
Zm00001d009870_P008	Maize	cytosol	90.41	29.27
Zm00001d037873_P010	Maize	cytosol	90.41	29.27
Zm00001d037875_P014	Maize	cytosol	90.41	29.27
Zm00001d037877_P014	Maize	cytosol	90.41	29.27
Zm00001d037905_P010	Maize	cytosol	90.41	29.27
KRH34904	Soybean	nucleus	89.73	29.24
AT1G07920.1	Thale cress	cytosol	89.73	29.18
AT1G07930.1	Thale cress	cytosol	89.73	29.18
AT1G07940.3	Thale cress	cytosol	89.73	29.18
AT5G60390.2	Thale cress	cytosol	89.73	29.18
Bra002483.1-P	Field mustard	cytosol	89.73	29.18
Bra006661.1-P	Field mustard	cytosol	89.73	29.18
Bra018242.1-P	Field mustard	cytosol	89.73	29.18
Bra018669.1-P	Field mustard	cytosol	89.73	29.18
Bra031602.1-P	Field mustard	cytosol	89.73	29.18
PGSC0003DMT400020968	Potato	cytosol	89.04	29.08
VIT_06s0004g03240.t01	Wine grape	cytosol	89.04	29.08
Zm00001d006596_P001	Maize	cytosol	89.04	29.08
PGSC0003DMT400053547	Potato	cytosol	89.04	29.02
PGSC0003DMT400053553	Potato	cytosol	89.04	29.02
PGSC0003DMT400059830	Potato	cytosol	89.04	29.02
PGSC0003DMT400059832	Potato	cytosol	89.04	29.02
Solyc06g005060.2.1	Tomato	cytosol	89.04	29.02
Solyc06g009970.2.1	Tomato	extracellular, nucleus, plastid	89.04	29.02
Bra020253.1-P	Field mustard	cytosol	89.04	28.95
KRH04781	Soybean	endoplasmic reticulum	88.36	28.86
KRH57863	Soybean	nucleus	88.36	28.86
VIT_13s0019g03920.t01	Wine grape	cytosol	89.73	28.79
HORVU5Hr1G100200.3	Barley	mitochondrion	89.73	28.23
HORVU5Hr1G100700.3	Barley	plasma membrane	89.73	28.17
CDX88757	Canola	cytosol	76.03	27.68
HORVU4Hr1G056820.1	Barley	plasma membrane	89.73	27.52
Solyc06g009960.1.1	Tomato	cytosol	76.71	27.32
TraesCS4B01G196800.2	Wheat	golgi	89.73	27.12
CDX95108	Canola	cytosol, extracellular	89.73	26.9
HORVU6Hr1G085320.3	Barley	cytosol	80.82	26.76
HORVU6Hr1G085370.1	Barley	cytosol	80.82	26.11
GSMUA_Achr7P15510_001	Banana	cytosol, plasma membrane	72.6	25.98
CDY09211	Canola	cytosol	76.03	25.93
CDY10804	Canola	cytosol	76.03	25.93
CDY34479	Canola	cytosol	76.03	25.93
CDY61938	Canola	cytosol	76.03	25.93
Bra031605.1-P	Field mustard	cytosol	75.34	25.76
CDY22710	Canola	cytosol	75.34	25.76
CDY22711	Canola	cytosol	75.34	25.76
Bra020251.1-P	Field mustard	cytosol	71.92	25.49
VIT_06s0004g03220.t01	Wine grape	cytosol	89.04	25.1
GSMUA_Achr3P17840_001	Banana	cytosol	26.03	25.0
CDX93604	Canola	cytosol	76.03	24.13
Bra030707.1-P	Field mustard	cytosol	89.73	22.2
CDY58828	Canola	cytosol	75.34	19.37
GSMUA_AchrUn_...	Banana	cytosol	26.03	18.18
GSMUA_Achr10P...	Banana	cytosol	26.03	13.62
GSMUA_Achr10P...	Banana	cytosol	26.03	13.48
Zm00001d004172_P005	Maize	cytosol	39.73	10.72
Zm00001d012846_P005	Maize	mitochondrion	32.88	10.57
Zm00001d034856_P003	Maize	mitochondrion	32.19	10.4
Zm00001d017092_P001	Maize	plastid	30.14	9.46
Zm00001d050969_P001	Maize	plastid	30.14	9.44
Zm00001d025100_P005	Maize	cytosol	32.88	8.56
Zm00001d001827_P005	Maize	cytosol	40.41	8.49
Zm00001d026213_P001	Maize	cytosol	40.41	7.11
CDX70032	Canola	cytosol	10.96	4.65
CDY06288	Canola	cytosol	0.0	0.0
CDY06290	Canola	cytosol	0.0	0.0
CDY67376	Canola	cytosol	0.0	0.0
CDY69678	Canola	cytosol	0.0	0.0
GSMUA_Achr6P04090_001	Banana	cytosol	0.0	0.0
HORVU4Hr1G056830.1	Barley	cytosol	0.0	0.0
Zm00001d040673_P001	Maize	mitochondrion	0.0	0.0

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	UniProt:A0A1D6FMY1	ProteinID:AQK93021.1	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003746	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488
GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006412
GO:GO:0006414	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016787	GO:GO:0019538	InterPro:G_TR_CS	InterPro:IPR000795	InterPro:P-loop_NTPase	PFAM:PF00009
PRINTS:PR00315	ScanProsite:PS00301	PFscan:PS51722	PANTHER:PTHR23115	PANTHER:PTHR23115:SF230	SUPFAM:SSF52540
InterPro:TF_GTP-bd_dom	UniParc:UPI000221601D	EnsemblPlantsGene:Zm00001d009887	EnsemblPlants:Zm00001d009887_P001	EnsemblPlants:Zm00001d009887_T001	:

Description

Elongation factor 1-alpha 2

Coordinates

chr8:-:87459056..87459496

Molecular Weight (calculated)

16359.6 Da

IEP (calculated)

6.677

GRAVY (calculated)

-0.188

Length

146 amino acids

Sequence
(BLAST)

001: MGTEKSHINI VVIGHVESDK STTTGHLIYK FGGIDKRVIE RFEEAAEMNK RSFKYAWVLD KLKAERERGI TVDIALWKFE TTKYYCAVID APGHRDFIKN
101: MITSTSQGDC VVLIIDSTTG GFEAGISKDG QTREHALLAF TVSLLE

Best Arabidopsis Sequence Match ( AT1G07930.1 )
(BLAST)

001: MGKEKFHINI VVIGHVDSGK STTTGHLIYK LGGIDKRVIE RFEKEAAEMN KRSFKYAWVL DKLKAERERG ITIDIALWKF ETTKYYCTVI DAPGHRDFIK
101: NMITGTSQAD CAVLIIDSTT GGFEAGISKD GQTREHALLA FTLGVKQMIC CCNKMDATTP KYSKARYDEI IKEVSSYLKK VGYNPDKIPF VPISGFEGDN
201: MIERSTNLDW YKGPTLLEAL DQINEPKRPS DKPLRLPLQD VYKIGGIGTV PVGRVETGMI KPGMVVTFAP TGLTTEVKSV EMHHESLLEA LPGDNVGFNV
301: KNVAVKDLKR GYVASNSKDD PAKGAANFTS QVIIMNHPGQ IGNGYAPVLD CHTSHIAVKF SEILTKIDRR SGKEIEKEPK FLKNGDAGMV KMTPTKPMVV
401: ETFSEYPPLG RFAVRDMRQT VAVGVIKSVD KKDPTGAKVT KAAVKKGAK

Arabidopsis Description

A1Elongation factor 1-alpha 4 [Source:UniProtKB/Swiss-Prot;Acc:Q8GTY0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.