Factsheet for GSMUA_AchrUn_randomP25710_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
extracellular 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr11P...
GSMUA_Achr5P21440_001
GSMUA_Achr8P09400_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G07920.1	GSMUA_Achr11P...	AT3G54220.1	19228333
AT1G07920.1	GSMUA_Achr5P21440_001	AT3G54220.1	19228333
AT1G07920.1	GSMUA_Achr8P09400_001	AT3G54220.1	19228333
AT1G07930.1	GSMUA_Achr11P...	AT3G54220.1	19228333
AT1G07930.1	GSMUA_Achr5P21440_001	AT3G54220.1	19228333
AT1G07930.1	GSMUA_Achr8P09400_001	AT3G54220.1	19228333

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P17840_001	Banana	cytosol	64.11	88.16
GSMUA_Achr6P04090_001	Banana	cytosol	69.38	73.6
GSMUA_Achr10P...	Banana	cytosol	89.0	66.67
CDY67375	Canola	cytosol	86.12	64.75
CDY06289	Canola	cytosol	77.51	63.28
CDY06287	Canola	cytosol	65.55	60.35
GSMUA_Achr10P...	Banana	cytosol	73.21	54.26
HORVU5Hr1G051280.1	Barley	cytosol	24.88	50.0
GSMUA_Achr5P24440_001	Banana	cytosol	29.19	48.03
GSMUA_Achr7P15510_001	Banana	cytosol, plasma membrane	89.95	46.08
CDX88757	Canola	cytosol	87.56	45.64
HORVU4Hr1G056830.1	Barley	cytosol	62.68	44.71
Bra031601.1-P	Field mustard	cytosol	42.11	44.44
Zm00001d037882_P001	Maize	cytosol	38.76	43.78
Bra031605.1-P	Field mustard	cytosol	87.56	42.86
CDY22711	Canola	cytosol	87.56	42.86
CDY22710	Canola	cytosol	87.56	42.86
CDY34479	Canola	cytosol	87.56	42.76
CDY61938	Canola	cytosol	87.56	42.76
CDY10804	Canola	cytosol	87.56	42.76
CDY09211	Canola	cytosol	87.56	42.76
CDX70032	Canola	cytosol	69.38	42.15
Zm00001d046449_P003	Maize	cytosol	89.95	42.06
Os03t0178000-02	Rice	cytosol	89.95	42.06
Os03t0177900-01	Rice	plasma membrane	89.95	42.06
Os03t0177500-01	Rice	cytosol	89.95	42.06
Os03t0177400-01	Rice	cytosol	89.95	42.06
Solyc06g009970.2.1	Tomato	extracellular, nucleus, plastid	89.95	41.96
Solyc06g005060.2.1	Tomato	cytosol	89.95	41.96
PGSC0003DMT400020968	Potato	cytosol	89.47	41.83
PGSC0003DMT400059832	Potato	cytosol	89.47	41.74
PGSC0003DMT400059830	Potato	cytosol	89.47	41.74
PGSC0003DMT400053553	Potato	cytosol	89.47	41.74
PGSC0003DMT400053547	Potato	cytosol	89.47	41.74
PGSC0003DMT400050663	Potato	cytosol	89.0	41.61
KXG20299	Sorghum	cytosol	89.0	41.61
KXG20296	Sorghum	cytosol	89.0	41.61
KXG20294	Sorghum	cytosol	89.0	41.61
KXG20293	Sorghum	cytosol	89.0	41.61
Solyc11g069700.1.1	Tomato	nucleus	89.0	41.61
Zm00001d036904_P001	Maize	cytosol	89.0	41.61
Zm00001d037905_P010	Maize	cytosol	89.47	41.46
Zm00001d037873_P010	Maize	cytosol	89.47	41.46
Zm00001d009870_P008	Maize	cytosol	89.47	41.46
Zm00001d009868_P015	Maize	cytosol	89.47	41.46
TraesCS4A01G107600.1	Wheat	cytosol	88.52	41.39
TraesCS5A01G415600.1	Wheat	cytosol	88.52	41.39
TraesCS5A01G415400.1	Wheat	cytosol	88.52	41.39
TraesCS4A01G107700.1	Wheat	cytosol	88.52	41.39
Zm00001d037875_P014	Maize	cytosol	89.0	41.24
Zm00001d037877_P014	Maize	cytosol	89.0	41.24
TraesCS5B01G418200.1	Wheat	cytosol	88.04	41.16
TraesCS5B01G418100.1	Wheat	cytosol	88.04	41.16
HORVU4Hr1G056740.1	Barley	cytosol	88.04	41.16
TraesCS4B01G196900.1	Wheat	golgi	88.04	41.16
AT1G07930.1	Thale cress	cytosol	87.56	40.76
AT1G07920.1	Thale cress	cytosol	87.56	40.76
AT1G07940.3	Thale cress	cytosol	87.56	40.76
AT5G60390.2	Thale cress	cytosol	87.56	40.76
Bra002483.1-P	Field mustard	cytosol	87.56	40.76
Bra006661.1-P	Field mustard	cytosol	87.56	40.76
Bra018669.1-P	Field mustard	cytosol	87.56	40.76
Bra020253.1-P	Field mustard	cytosol	87.56	40.76
Bra031602.1-P	Field mustard	cytosol	87.56	40.76
Solyc06g009960.1.1	Tomato	cytosol	79.9	40.73
Bra018242.1-P	Field mustard	cytosol	87.08	40.53
VIT_08s0040g02330.t01	Wine grape	cytosol	86.6	40.49
CDX93604	Canola	cytosol	87.56	39.78
HORVU5Hr1G100200.3	Barley	mitochondrion	88.04	39.66
HORVU5Hr1G100700.3	Barley	plasma membrane	88.04	39.57
HORVU6Hr1G085320.3	Barley	cytosol	83.25	39.46
HORVU6Hr1G085370.1	Barley	cytosol	83.25	38.5
HORVU4Hr1G056820.1	Barley	plasma membrane	87.56	38.45
TraesCS4B01G196800.2	Wheat	golgi	88.04	38.1
CDX95108	Canola	cytosol, extracellular	87.56	37.58
GSMUA_Achr10P...	Banana	cytosol, plastid	36.36	35.35
Bra020251.1-P	Field mustard	cytosol	69.38	35.19
CDY09214	Canola	cytosol	26.32	34.38
GSMUA_Achr6P02020_001	Banana	mitochondrion	56.46	34.1
CDY58828	Canola	cytosol	87.56	32.22
Bra030707.1-P	Field mustard	cytosol	87.56	31.02
OQU75597	Sorghum	cytosol	24.88	29.71
Zm00001d009887_P001	Maize	cytosol	18.18	26.03
GSMUA_Achr1P00050_001	Banana	cytosol	37.8	17.95
OQU75582	Sorghum	cytosol	10.53	17.6
GSMUA_Achr3P07900_001	Banana	cytosol	38.28	15.07
GSMUA_Achr8P06040_001	Banana	mitochondrion	29.19	13.41
GSMUA_AchrUn_...	Banana	cytosol	11.48	13.11
GSMUA_Achr3P24830_001	Banana	mitochondrion	27.75	12.75
GSMUA_Achr4P05390_001	Banana	cytosol	33.49	10.29
GSMUA_Achr6P06690_001	Banana	mitochondrion, plastid	14.83	9.9
GSMUA_Achr9P01930_001	Banana	plastid	5.26	4.26
CDY69678	Canola	cytosol	0.96	1.74
CDY06288	Canola	cytosol	0.96	1.74
CDY06290	Canola	cytosol	0.96	1.74
CDY67376	Canola	cytosol	0.96	1.74
GSMUA_Achr2P19000_001	Banana	cytosol	0.0	0.0
TraesCS2D01G323300.1	Wheat	cytosol, mitochondrion	0.0	0.0

Protein Annotations

Gene3D:2.40.30.10	Gene3D:3.40.50.300	MapMan:35.1	InterPro:EFTu-like_2	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0016787	EnsemblPlantsGene:GSMUA_AchrUn_randomG25710_001
EnsemblPlants:GSMUA_AchrUn_randomP25710_001	EnsemblPlants:GSMUA_AchrUn_randomT25710_001	InterPro:IPR000795	UniProt:M0UCC9	InterPro:P-loop_NTPase	PFAM:PF00009
PFAM:PF03144	PFscan:PS51722	PANTHER:PTHR23115	PANTHER:PTHR23115:SF230	SUPFAM:SSF50447	SUPFAM:SSF52540
InterPro:TF_GTP-bd_dom	InterPro:Transl_B-barrel_sf	UniParc:UPI0002968DBC	:	:	:

Description

Elongation factor 1-alpha [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG25710_001]

Coordinates

chrchrUn_random:+:126726830..126728760

Molecular Weight (calculated)

22742.4 Da

IEP (calculated)

5.767

GRAVY (calculated)

-0.203

Length

209 amino acids

Sequence
(BLAST)

001: MITGTSQADC AVLIIDSTTG GFEAGISKDG QTREHALLAF TLGVKQMICC CNKMDATTPK YSKARYDEIV KEVSSYLKKV GYNPEKIPFV PISGFEGDNM
101: IERSTNLDWY KGPTLLEALD LIQEPKRPTD KPLRLPLQDV YKIGGIGTVP VGRVETGVLK PGMVVTFGPT GLTTEVKSVE MHHEALQEAF PEAASFTSQA
201: IWKGAREGA

Best Arabidopsis Sequence Match ( AT1G07930.1 )
(BLAST)

001: MGKEKFHINI VVIGHVDSGK STTTGHLIYK LGGIDKRVIE RFEKEAAEMN KRSFKYAWVL DKLKAERERG ITIDIALWKF ETTKYYCTVI DAPGHRDFIK
101: NMITGTSQAD CAVLIIDSTT GGFEAGISKD GQTREHALLA FTLGVKQMIC CCNKMDATTP KYSKARYDEI IKEVSSYLKK VGYNPDKIPF VPISGFEGDN
201: MIERSTNLDW YKGPTLLEAL DQINEPKRPS DKPLRLPLQD VYKIGGIGTV PVGRVETGMI KPGMVVTFAP TGLTTEVKSV EMHHESLLEA LPGDNVGFNV
301: KNVAVKDLKR GYVASNSKDD PAKGAANFTS QVIIMNHPGQ IGNGYAPVLD CHTSHIAVKF SEILTKIDRR SGKEIEKEPK FLKNGDAGMV KMTPTKPMVV
401: ETFSEYPPLG RFAVRDMRQT VAVGVIKSVD KKDPTGAKVT KAAVKKGAK

Arabidopsis Description

A1Elongation factor 1-alpha 4 [Source:UniProtKB/Swiss-Prot;Acc:Q8GTY0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.