Factsheet for Solyc06g009970.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, extracellular, nucleus

Predictor Summary:

cytosol 5
vacuole 1
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

extracellular: 22364583
plastid: 22908117
nucleus: 25464976
plastid: 26371478
unclear: 26455813
nucleus: 28394025
extracellular: 29876421

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

msms PMID: 22364583 doi

P Shah, AL Powell, R Orlando, C Bergmann, G Gutierrez-Sanchez

Complex Carbohydrate Research Center, University of Georgia, Athens, Georgia, United States.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc10g074680.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G07920.1	Solyc10g074680.1.1	AT3G54220.1	19228333
AT1G07930.1	Solyc10g074680.1.1	AT3G54220.1	19228333

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g005060.2.1	Tomato	cytosol	100.0	100.0
PGSC0003DMT400053547	Potato	cytosol	99.11	99.11
PGSC0003DMT400053553	Potato	cytosol	99.11	99.11
PGSC0003DMT400059830	Potato	cytosol	99.11	99.11
PGSC0003DMT400059832	Potato	cytosol	99.11	99.11
Solyc06g009960.1.1	Tomato	cytosol	90.62	99.02
GSMUA_Achr5P24440_001	Banana	cytosol	27.9	98.43
CDY09214	Canola	cytosol	35.04	98.12
HORVU5Hr1G051280.1	Barley	cytosol	22.77	98.08
Solyc11g069700.1.1	Tomato	nucleus	97.77	97.99
Os03t0177400-01	Rice	cytosol	96.88	97.09
Os03t0177500-01	Rice	cytosol	96.88	97.09
Os03t0177900-01	Rice	plasma membrane	96.88	97.09
Os03t0178000-02	Rice	cytosol	96.88	97.09
KRG93959	Soybean	nucleus	96.43	96.64
CDY06287	Canola	cytosol	48.88	96.48
KRH57863	Soybean	nucleus	96.21	96.42
KRH58241	Soybean	nucleus	96.21	96.42
Zm00001d046449_P003	Maize	cytosol	96.21	96.42
Zm00001d037882_P001	Maize	cytosol	39.73	96.22
AT1G07920.1	Thale cress	cytosol	96.43	96.21
AT1G07930.1	Thale cress	cytosol	96.43	96.21
AT1G07940.3	Thale cress	cytosol	96.43	96.21
AT5G60390.2	Thale cress	cytosol	96.43	96.21
KXG20293	Sorghum	cytosol	95.98	96.2
KXG20294	Sorghum	cytosol	95.98	96.2
KXG20296	Sorghum	cytosol	95.98	96.2
KXG20299	Sorghum	cytosol	95.98	96.2
Zm00001d036904_P001	Maize	cytosol	95.98	96.2
KRH04781	Soybean	endoplasmic reticulum	95.76	95.97
KRH07098	Soybean	cytosol, mitochondrion, nucleus	95.76	95.97
Bra031601.1-P	Field mustard	cytosol	42.41	95.96
Zm00001d037905_P010	Maize	cytosol	96.43	95.79
Bra002483.1-P	Field mustard	cytosol	95.98	95.77
Bra018669.1-P	Field mustard	cytosol	95.98	95.77
Bra031602.1-P	Field mustard	cytosol	95.98	95.77
CDX88757	Canola	cytosol	85.71	95.76
Zm00001d009868_P015	Maize	cytosol	96.21	95.57
Zm00001d009870_P008	Maize	cytosol	96.21	95.57
Zm00001d037873_P010	Maize	cytosol	96.21	95.57
CDY09211	Canola	cytosol	91.29	95.56
CDY10804	Canola	cytosol	91.29	95.56
CDY34479	Canola	cytosol	91.29	95.56
CDY61938	Canola	cytosol	91.29	95.56
Bra018242.1-P	Field mustard	cytosol	95.76	95.55
Bra020253.1-P	Field mustard	cytosol	95.76	95.55
KRH34904	Soybean	nucleus	95.54	95.54
Zm00001d037875_P014	Maize	cytosol	95.98	95.34
Zm00001d037877_P014	Maize	cytosol	95.98	95.34
CDY67375	Canola	cytosol	59.15	95.32
Bra031605.1-P	Field mustard	cytosol	90.85	95.32
CDY22710	Canola	cytosol	90.85	95.32
CDY22711	Canola	cytosol	90.85	95.32
HORVU4Hr1G056740.1	Barley	cytosol	95.09	95.3
TraesCS4B01G196900.1	Wheat	golgi	95.09	95.3
TraesCS5B01G418100.1	Wheat	cytosol	95.09	95.3
TraesCS5B01G418200.1	Wheat	cytosol	95.09	95.3
GSMUA_Achr10P...	Banana	cytosol	59.15	94.98
CDY06289	Canola	cytosol	54.24	94.92
Bra020251.1-P	Field mustard	cytosol	87.28	94.9
Bra006661.1-P	Field mustard	cytosol	95.09	94.88
TraesCS4A01G107600.1	Wheat	cytosol	94.64	94.85
TraesCS4A01G107700.1	Wheat	cytosol	94.64	94.85
TraesCS5A01G415400.1	Wheat	cytosol	94.64	94.85
TraesCS5A01G415600.1	Wheat	cytosol	94.64	94.85
VIT_08s0040g02330.t01	Wine grape	cytosol	94.42	94.63
GSMUA_Achr10P...	Banana	cytosol	59.38	94.33
HORVU4Hr1G056830.1	Barley	cytosol	61.38	93.86
OQU75582	Sorghum	cytosol	26.12	93.6
CDY06288	Canola	cytosol	23.88	93.04
CDY06290	Canola	cytosol	23.88	93.04
CDY67376	Canola	cytosol	23.88	93.04
CDY69678	Canola	cytosol	23.88	93.04
GSMUA_Achr6P04090_001	Banana	cytosol	40.62	92.39
HORVU5Hr1G100200.3	Barley	mitochondrion	95.09	91.81
HORVU5Hr1G100700.3	Barley	plasma membrane	95.09	91.61
GSMUA_Achr3P17840_001	Banana	cytosol	30.58	90.13
GSMUA_AchrUn_...	Banana	cytosol	41.96	89.95
HORVU6Hr1G085320.3	Barley	cytosol	88.39	89.8
CDX70032	Canola	cytosol	68.75	89.53
HORVU4Hr1G056820.1	Barley	plasma membrane	95.09	89.5
Zm00001d009887_P001	Maize	cytosol	29.02	89.04
CDX93604	Canola	cytosol	91.29	88.91
CDX95108	Canola	cytosol, extracellular	95.98	88.3
TraesCS4B01G196800.2	Wheat	golgi	95.09	88.2
GSMUA_Achr7P15510_001	Banana	cytosol, plasma membrane	79.46	87.25
HORVU6Hr1G085370.1	Barley	cytosol	87.72	86.95
OQU75597	Sorghum	cytosol	33.71	86.29
GSMUA_Achr10P...	Banana	cytosol, plastid	39.29	81.86
Bra030707.1-P	Field mustard	cytosol	95.76	72.71
CDY58828	Canola	cytosol	90.62	71.48
GSMUA_Achr6P02020_001	Banana	mitochondrion	52.68	68.21
TraesCS2D01G323300.1	Wheat	cytosol, mitochondrion	15.62	66.04
Solyc03g118990.1.1	Tomato	cytosol	7.59	48.57
Solyc06g069020.2.1	Tomato	cytosol, nucleus	34.82	29.21
Solyc06g008940.2.1	Tomato	unclear	28.57	28.38
Solyc09g073000.2.1	Tomato	plastid	28.12	28.0
Solyc06g071790.2.1	Tomato	nucleus, plastid	27.01	26.89
Solyc03g112150.1.1	Tomato	plastid	28.57	26.83
Solyc03g119290.2.1	Tomato	cytosol	33.93	25.85
Solyc12g036410.1.1	Tomato	cytosol	33.48	25.51

Protein Annotations

MapMan:17.5.1.1	Gene3D:2.40.30.10	Gene3D:3.40.50.300	ProteinID:CAA37212.1	InterPro:EFTu-like_2	GO:GO:0000166
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003746	GO:GO:0003824	GO:GO:0003924
GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006412	GO:GO:0006414	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	InterPro:G_TR_CS	InterPro:IPR000795	HAMAP:MF_00118_A
InterPro:P-loop_NTPase	UniProt:P17786	PFAM:PF00009	PFAM:PF03143	PFAM:PF03144	PRINTS:PR00315
ScanProsite:PS00301	PFscan:PS51722	PANTHER:PTHR23115	PANTHER:PTHR23115:SF230	SUPFAM:SSF50447	SUPFAM:SSF50465
SUPFAM:SSF52540	EnsemblPlantsGene:Solyc06g009970.2	EnsemblPlants:Solyc06g009970.2.1	InterPro:TF_GTP-bd_dom	TIGRFAMs:TIGR00483	InterPro:Transl_B-barrel_sf
InterPro:Transl_elong_EF1A/Init_IF2_C	InterPro:Transl_elong_EF1A_euk/arc	InterPro:Transl_elong_EFTu/EF1A_C	UniParc:UPI0000129C05	EMBL:X14449	:

Description

Elongation factor 1-alpha [Source:UniProtKB/Swiss-Prot;Acc:P17786]

Coordinates

chr6:+:4379727..4382219

Molecular Weight (calculated)

49290.9 Da

IEP (calculated)

9.637

GRAVY (calculated)

-0.321

Length

448 amino acids

Sequence
(BLAST)

001: MGKEKIHISI VVIGHVDSGK STTTGHLIYK LGGIDKRVIE RFEKEAAEMN KRSFKYAWVL DKLKAERERG ITIDIALWKF ETTKYYCTVI DAPGHRDFIK
101: NMITGTSQAD CAVLIIDSTT GGFEAGISKD GQTREHALLA FTLGVKQMIC CCNKMDATTP KYSKARYDEI VKEVSSYLKK VGYNPDKIPF VPISGFEGDN
201: MIERSTNLDW YKGPTLLEAL DQINEPKRPS DKPLRLPLQD VYKIGGIGTV PVGRVETGVI KPGMVVTFGP TGLTTEVKSV EMHHEALQEA LPGDNVGFNV
301: KNVAVKDLKR GYVASNSKDD PAKGAASFTA QVIIMNHPGQ IGNGYAPVLD CHTSHIAVKF AEILTKIDRR SGKELEKEPK FLKNGDAGMV KMIPTKPMVV
401: ETFAEYPPLG RFAVRDMRQT VAVGVVKNVD KKDPTGAKVT KAAQKKGK

Best Arabidopsis Sequence Match ( AT1G07930.1 )
(BLAST)

001: MGKEKFHINI VVIGHVDSGK STTTGHLIYK LGGIDKRVIE RFEKEAAEMN KRSFKYAWVL DKLKAERERG ITIDIALWKF ETTKYYCTVI DAPGHRDFIK
101: NMITGTSQAD CAVLIIDSTT GGFEAGISKD GQTREHALLA FTLGVKQMIC CCNKMDATTP KYSKARYDEI IKEVSSYLKK VGYNPDKIPF VPISGFEGDN
201: MIERSTNLDW YKGPTLLEAL DQINEPKRPS DKPLRLPLQD VYKIGGIGTV PVGRVETGMI KPGMVVTFAP TGLTTEVKSV EMHHESLLEA LPGDNVGFNV
301: KNVAVKDLKR GYVASNSKDD PAKGAANFTS QVIIMNHPGQ IGNGYAPVLD CHTSHIAVKF SEILTKIDRR SGKEIEKEPK FLKNGDAGMV KMTPTKPMVV
401: ETFSEYPPLG RFAVRDMRQT VAVGVIKSVD KKDPTGAKVT KAAVKKGAK

Arabidopsis Description

A1Elongation factor 1-alpha 4 [Source:UniProtKB/Swiss-Prot;Acc:Q8GTY0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.