Factsheet for Solyc06g069020.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

cytosol 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g118990.1.1	Tomato	cytosol	10.86	82.86
KRH60492	Soybean	cytosol	75.47	79.8
KRH41785	Soybean	cytosol, nucleus	74.91	79.37
VIT_17s0000g02860.t01	Wine grape	plastid	70.79	72.83
CDY19192	Canola	cytosol	72.1	70.9
AT1G18070.3	Thale cress	cytosol	70.97	69.8
CDX96737	Canola	cytosol	66.48	68.53
CDX83874	Canola	endoplasmic reticulum	65.17	67.18
CDY21721	Canola	cytosol	72.1	66.84
CDX81859	Canola	endoplasmic reticulum, golgi, plasma membrane	71.91	65.75
CDY26187	Canola	golgi, vacuole	71.91	65.64
Bra016571.1-P	Field mustard	cytosol	65.73	49.51
Solyc11g069700.1.1	Tomato	nucleus	29.96	35.79
Solyc06g009960.1.1	Tomato	cytosol	26.97	35.12
Solyc06g005060.2.1	Tomato	cytosol	29.21	34.82
Solyc06g009970.2.1	Tomato	extracellular, nucleus, plastid	29.21	34.82
Solyc12g036410.1.1	Tomato	cytosol	31.09	28.23
Solyc03g119290.2.1	Tomato	cytosol	30.9	28.06
Solyc06g071790.2.1	Tomato	nucleus, plastid	21.16	25.11
Solyc03g112150.1.1	Tomato	plastid	22.28	24.95
Solyc06g008940.2.1	Tomato	unclear	20.6	24.39
Solyc09g073000.2.1	Tomato	plastid	20.04	23.78

Protein Annotations

MapMan:17.3.2.1.2	Gene3D:2.40.30.10	Gene3D:3.40.50.300	InterPro:EFTu-like_2	GO:GO:0000166	GO:GO:0000288
GO:GO:0002184	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003747	GO:GO:0003824
GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005829	GO:GO:0006139	GO:GO:0006412	GO:GO:0006415	GO:GO:0008135
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043
GO:GO:0016787	GO:GO:0018444	GO:GO:0019538	InterPro:G_TR_CS	InterPro:IPR000795	UniProt:K4C875
InterPro:P-loop_NTPase	PFAM:PF00009	PFAM:PF03143	PFAM:PF03144	PRINTS:PR00315	PRINTS:PR01343
ScanProsite:PS00301	PFscan:PS51722	PANTHER:PTHR23115	PANTHER:PTHR23115:SF36	SUPFAM:SSF50447	SUPFAM:SSF50465
SUPFAM:SSF52540	EnsemblPlantsGene:Solyc06g069020.2	EnsemblPlants:Solyc06g069020.2.1	InterPro:Sup35	InterPro:TF_GTP-bd_dom	InterPro:Transl_B-barrel_sf
InterPro:Transl_elong_EF1A/Init_IF2_C	InterPro:Transl_elong_EFTu/EF1A_C	UniParc:UPI000276677C	SEG:seg	:	:

Description

No Description!

Coordinates

chr6:+:42822235..42834103

Molecular Weight (calculated)

59420.4 Da

IEP (calculated)

5.007

GRAVY (calculated)

-0.321

Length

534 amino acids

Sequence
(BLAST)

001: MDIEEDIKAL QLDSSEDTVL VNVEDARPGE AIKHDKVDGE DSFMEEERKT DDVGKPDMPE DELRDEAHPD LKPEHVDPKG VSGKESSPPE DMQVEVEVNK
101: KRHLNVVFIG HVDAGKSTIG GQILLLSGQV DDRTIQKYEK EAKDKNRESW YMAYIMDTNE EERVKGITVE VGRAHFETET TRFTILDAPG HKSYVPNMIS
201: GASQADIGVL VISARKGEFE TGYERGGQTR EHVQLAKTLG VTKLIIVVNK MDDPTVNWSK ERYDEIESKM VPFLRSSGYN VKKDVQFLPI SGLLGSNLKT
301: RLEKSVCPWW SGHCLFEVLD AVEVPPRDPN GPLRMPIIDK FKDMGTVVMG KIESGSIREG DNLLIMPNKA AVKVLAIFCD EDRVRHVGPG ENVRVRLSGV
401: EEDDLLSGFV LCSVAKPIPA VTEFVAQLQI LELLDNAIFT AGYKAVLHVH AVVEECEIVE LMQQIDLKTK KPMKKKPLFV KNGAIVLCRV QVNNMICVEK
501: FSNFAQLGRF TLRTEGKTVA VGKITALPTV ADSA

Best Arabidopsis Sequence Match ( AT1G18070.1 )
(BLAST)

001: MDLEAEIRAL QLESADENNG VVIPEVHNSH EVENLDKAPE DLKDEVQESI PVPDEQEASE DHDEVMLHPV HNPAKAKEKA AQEKAAKEEA EDVAEANKKR
101: HLNVVFIGHV DAGKSTIGGQ ILFLSGQVDD RQIQKYEKEA KDKSRESWYM AYIMDTNEEE RLKGKTVEVG RAHFETESTR FTILDAPGHK SYVPNMISGA
201: SQADIGVLVI SARKGEFETG YERGGQTREH VQLAKTLGVS KLIVVVNKMD DPTVNWSKER YDEIEQKMVP FLKASGYNTK KDVVFLPISG LMGKNMDQRM
301: GQEICPWWSG PSFFEVLDSI EIPPRDPNGP FRMPIIDKFK DMGTVVMGKV ESGSIREGDS LVVMPNKEQV KVVAIYCDED KVKRAGPGEN LRVRITGIED
401: EDILSGFVLS SIVNPVPAVT EFVAQLQILE LLDNAIFTAG YKAILHIHAV VEECEIIELK SQIDLKTRKP MKKKVLFVKN GAAVVCRIQV TNSICIEKFS
501: DFPQLGRFTL RTEGKTIAVG KVTELLSSVS SA

Arabidopsis Description

T10F20.8 protein [Source:UniProtKB/TrEMBL;Acc:Q9LMS7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.