Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY19192 | Canola | cytosol | 87.29 | 87.29 |
| CDY21721 | Canola | cytosol | 89.32 | 84.2 |
| CDX83874 | Canola | endoplasmic reticulum | 79.01 | 82.82 |
| CDX81859 | Canola | endoplasmic reticulum, golgi, plasma membrane | 88.95 | 82.71 |
| CDY26187 | Canola | golgi, vacuole | 87.85 | 81.54 |
| KRH41785 | Soybean | cytosol, nucleus | 74.95 | 80.75 |
| CDX96737 | Canola | cytosol | 76.8 | 80.5 |
| KRH60492 | Soybean | cytosol | 74.77 | 80.4 |
| HORVU2Hr1G012860.1 | Barley | cytosol | 66.67 | 74.33 |
| VIT_17s0000g02860.t01 | Wine grape | plastid | 69.24 | 72.45 |
| Solyc06g069020.2.1 | Tomato | cytosol, nucleus | 69.8 | 70.97 |
| GSMUA_Achr3P07900_001 | Banana | cytosol | 68.69 | 70.24 |
| PGSC0003DMT400014425 | Potato | cytosol | 63.17 | 69.86 |
| Os04t0270100-01 | Rice | cytosol | 59.12 | 68.59 |
| TraesCS2B01G091600.1 | Wheat | cytosol | 66.3 | 67.54 |
| TraesCS2D01G075300.1 | Wheat | cytosol | 66.3 | 67.54 |
| EES10540 | Sorghum | cytosol | 66.85 | 67.47 |
| Zm00001d004172_P005 | Maize | cytosol | 67.22 | 67.47 |
| TraesCS2A01G076700.1 | Wheat | cytosol, golgi, nucleus | 66.11 | 67.35 |
| Os02t0456500-01 | Rice | cytosol | 30.39 | 63.71 |
| Zm00001d025100_P005 | Maize | cytosol | 60.41 | 58.47 |
| Bra016571.1-P | Field mustard | cytosol | 75.32 | 57.69 |
| AT5G60390.2 | Thale cress | cytosol | 28.91 | 34.97 |
| AT1G07940.3 | Thale cress | cytosol | 28.91 | 34.97 |
| AT1G07930.1 | Thale cress | cytosol | 28.91 | 34.97 |
| AT1G07920.1 | Thale cress | cytosol | 28.91 | 34.97 |
| AT4G02930.1 | Thale cress | mitochondrion | 20.26 | 24.23 |
| AT4G20360.1 | Thale cress | plastid | 20.63 | 23.53 |
| AT5G10630.4 | Thale cress | cytosol | 29.83 | 21.8 |
Protein Annotations
| MapMan:17.3.2.1.2 | Gene3D:2.40.30.10 | Gene3D:3.40.50.300 | EntrezGene:838387 | ProteinID:AAF97824.1 | ProteinID:AEE29672.1 |
| ArrayExpress:AT1G18070 | EnsemblPlantsGene:AT1G18070 | RefSeq:AT1G18070 | TAIR:AT1G18070 | RefSeq:AT1G18070-TAIR-G | EnsemblPlants:AT1G18070.3 |
| TAIR:AT1G18070.3 | Unigene:At.43340 | ncoils:Coil | InterPro:EFTu-like_2 | GO:GO:0000166 | GO:GO:0002184 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003743 | GO:GO:0003746 | GO:GO:0003747 |
| GO:GO:0003824 | GO:GO:0003924 | GO:GO:0005488 | GO:GO:0005525 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005773 | GO:GO:0005829 | GO:GO:0006412 | GO:GO:0006413 |
| GO:GO:0006414 | GO:GO:0008135 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0016043 | GO:GO:0016787 | GO:GO:0018444 | GO:GO:0019538 | InterPro:G_TR_CS | InterPro:IPR000795 |
| RefSeq:NP_001185026.1 | InterPro:P-loop_NTPase | PFAM:PF00009 | PFAM:PF03143 | PFAM:PF03144 | PO:PO:0000013 |
| PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 |
| PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 |
| PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 |
| PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 | PRINTS:PR00315 | ScanProsite:PS00301 | PFscan:PS51722 |
| PANTHER:PTHR23115 | PANTHER:PTHR23115:SF36 | UniProt:Q9LMS7 | SUPFAM:SSF50447 | SUPFAM:SSF50465 | SUPFAM:SSF52540 |
| InterPro:TF_GTP-bd_dom | InterPro:Transl_B-barrel_sf | InterPro:Transl_elong_EF1A/Init_IF2_C | InterPro:Transl_elong_EFTu/EF1A_C | UniParc:UPI000009CFF7 | SEG:seg |
Description
T10F20.8 protein [Source:UniProtKB/TrEMBL;Acc:Q9LMS7]
Coordinates
chr1:-:6213777..6218340
Molecular Weight (calculated)
60510.5 Da
IEP (calculated)
4.965
GRAVY (calculated)
-0.340
Length
543 amino acids
Sequence
(BLAST)
(BLAST)
001: MDLEAEIRAL QLESADENNG VVIPEVHNSH EVENLDKAPE DLKDEVQESI PVPDEQEASE DHDEVMLHPV HNPAKAKEKA AQEKAAKEEA EDVAEANKKR
101: HLNVVFIGHV DAGKSTIGGQ ILFLSGQVDD RQIQKYEKEA KDKSRESWYM AYIMDTNEEE RLKGKTVEVG RAHFETESTR FTILDAPGHK SYVPNMISGA
201: SQADIGVLVI SARKGEFETG YERGGQTREH VQLAKTLGVS KLIVVVNKMD DPTVNWSKER YDEIEQKMVP FLKASGYNTK KDVVFLPISG LMGKNMDQRM
301: GQEICPWWSG PSFFEVLDSI EIPPRDPNGP FRLLTGIDFM NCRMPIIDKF KDMGTVVMGK VESGSIREGD SLVVMPNKEQ VKVVAIYCDE DKVKRAGPGE
401: NLRVRITGIE DEDILSGFVL SSIVNPVPAV TEFVAQLQIL ELLDNAIFTA GYKAILHIHA VVEECEIIEL KSQIDLKTRK PMKKKVLFVK NGAAVVCRIQ
501: VTNSICIEKF SDFPQLGRFT LRTEGKTIAV GKVTELLSSV SSA
101: HLNVVFIGHV DAGKSTIGGQ ILFLSGQVDD RQIQKYEKEA KDKSRESWYM AYIMDTNEEE RLKGKTVEVG RAHFETESTR FTILDAPGHK SYVPNMISGA
201: SQADIGVLVI SARKGEFETG YERGGQTREH VQLAKTLGVS KLIVVVNKMD DPTVNWSKER YDEIEQKMVP FLKASGYNTK KDVVFLPISG LMGKNMDQRM
301: GQEICPWWSG PSFFEVLDSI EIPPRDPNGP FRLLTGIDFM NCRMPIIDKF KDMGTVVMGK VESGSIREGD SLVVMPNKEQ VKVVAIYCDE DKVKRAGPGE
401: NLRVRITGIE DEDILSGFVL SSIVNPVPAV TEFVAQLQIL ELLDNAIFTA GYKAILHIHA VVEECEIIEL KSQIDLKTRK PMKKKVLFVK NGAAVVCRIQ
501: VTNSICIEKF SDFPQLGRFT LRTEGKTIAV GKVTELLSSV SSA
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.