CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: golgi, vacuole

Predictor Summary:

extracellular 5
endoplasmic reticulum 5
vacuole 6
plasma membrane 5
golgi 6
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, vacuole
Any Predictor:	cytosol, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	golgi
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY19192	Canola	cytosol	90.43	97.42
AT1G18070.3	Thale cress	cytosol	81.54	87.85
CDX83874	Canola	endoplasmic reticulum	76.58	86.49
CDY21721	Canola	cytosol	84.44	85.76
CDX81859	Canola	endoplasmic reticulum, golgi, plasma membrane	85.13	85.27
CDX96737	Canola	cytosol	73.5	83.01
KRH41785	Soybean	cytosol, nucleus	69.06	80.16
KRH60492	Soybean	cytosol	69.06	80.0
HORVU2Hr1G012860.1	Barley	cytosol	61.54	73.92
VIT_17s0000g02860.t01	Wine grape	plastid	64.27	72.45
Solyc06g069020.2.1	Tomato	cytosol, nucleus	65.64	71.91
PGSC0003DMT400014425	Potato	cytosol	58.63	69.86
GSMUA_Achr3P07900_001	Banana	cytosol	63.08	69.49
EES10540	Sorghum	cytosol	62.91	68.4
Os04t0270100-01	Rice	cytosol	54.53	68.16
TraesCS2B01G091600.1	Wheat	cytosol	61.54	67.54
TraesCS2D01G075300.1	Wheat	cytosol	61.54	67.54
TraesCS2A01G076700.1	Wheat	cytosol, golgi, nucleus	61.37	67.35
Zm00001d004172_P005	Maize	cytosol	62.05	67.1
Os02t0456500-01	Rice	cytosol	28.38	64.09
Zm00001d025100_P005	Maize	cytosol	56.24	58.65
CDY06287	Canola	cytosol	17.09	44.05
CDY09214	Canola	cytosol	11.79	43.12
CDY06289	Canola	cytosol	18.12	41.41
CDY67375	Canola	cytosol	18.8	39.57
CDX88757	Canola	cytosol	24.1	35.16
CDY10804	Canola	cytosol	25.3	34.58
CDY09211	Canola	cytosol	25.3	34.58
CDY61938	Canola	cytosol	25.3	34.58
CDY34479	Canola	cytosol	25.3	34.58
CDY22711	Canola	cytosol	24.96	34.19
CDY22710	Canola	cytosol	24.96	34.19
CDX93604	Canola	cytosol	25.3	32.17
CDX95108	Canola	cytosol, extracellular	26.15	31.42
CDY61091	Canola	cytosol	6.84	29.85
CDX70032	Canola	cytosol	16.58	28.2
CDY58828	Canola	cytosol	24.96	25.7
CDX78392	Canola	cytosol	27.35	25.48
CDX70362	Canola	cytosol	27.35	24.58
CDY67376	Canola	cytosol	4.79	24.35
CDY69678	Canola	cytosol	4.79	24.35
CDY06290	Canola	cytosol	4.79	24.35
CDY06288	Canola	cytosol	4.79	24.35
CDY22085	Canola	mitochondrion	18.46	23.74
CDY21923	Canola	mitochondrion	18.46	23.68
CDX90912	Canola	mitochondrion	18.29	23.62
CDY17978	Canola	mitochondrion	18.12	23.4
CDX85751	Canola	cytosol	27.69	22.69
CDY40108	Canola	cytosol	27.69	22.53
CDY49022	Canola	plastid	12.31	20.99
CDY49485	Canola	plastid	12.14	20.76
CDX82758	Canola	plastid	9.57	19.72
CDX98668	Canola	plastid	9.23	19.49
CDY54570	Canola	plastid	10.26	19.23
CDX94002	Canola	plastid	9.23	19.08
CDY31442	Canola	plastid	10.09	18.91
CDX78988	Canola	plastid	9.4	18.21
CDY62618	Canola	endoplasmic reticulum, mitochondrion	9.06	14.21

Protein Annotations

MapMan:17.3.2.1.2	Gene3D:2.40.30.10	Gene3D:3.40.50.300	GO:A0A078GLX1	UniProt:A0A078GLX1	EnsemblPlants:CDY26187
ProteinID:CDY26187	ProteinID:CDY26187.1	ncoils:Coil	InterPro:EFTu-like_2	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	GO:GO:0016787	EnsemblPlantsGene:GSBRNA2T00034847001	InterPro:G_TR_CS	InterPro:IPR000795	InterPro:P-loop_NTPase
PFAM:PF00009	PFAM:PF03143	PFAM:PF03144	PRINTS:PR00315	ScanProsite:PS00301	PFscan:PS51722
PANTHER:PTHR23115	PANTHER:PTHR23115:SF36	SUPFAM:SSF50447	SUPFAM:SSF50465	SUPFAM:SSF52540	InterPro:TF_GTP-bd_dom
TMHMM:TMhelix	InterPro:Transl_B-barrel_sf	InterPro:Transl_elong_EF1A/Init_IF2_C	InterPro:Transl_elong_EFTu/EF1A_C	UniParc:UPI0004EE9C8E	SEG:seg

Description

BnaA06g12300DBnaA06g12300D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GLX1]

Coordinates

chrLK032186:+:168839..173954

Molecular Weight (calculated)

64753.6 Da

IEP (calculated)

5.014

GRAVY (calculated)

-0.209

Length

585 amino acids

Sequence
(BLAST)

001: MLSGVFADLF RFVALGFVIF GDQVVLCEVF LYIIDLTVEF TSLQHVHHNS VINIEADIRA LQLDSAEENN GVGGVIPADQ NSDGVEIVDK MDEDLKDEVQ
101: ESAPVPDVQQ APEDHDQEML HPVHNPAKAK EKAAQEKAAK EEAEEEAEAN KKRHLNVVFI GHVDAGKSTI GGQILFLSGQ VDDRQIQKYE KEAKEKSRES
201: WYMAYIMDTN EEERAKGKTV EVGRAHFETE STRFTILDAP GHKSYVPNMI SGASQADIGV LVISARKGEF ETGYERGGQT REHVQLAKTL GVSKLVVVVN
301: KMDDPTVNWS KERYDEIEQK MVPFLKSSGY NTKKDVIFLP ISGLMGINID KSMDRNVCPW FSGPSFFEVL NAIEVPPRDP NGPFRMPIID KFKDMGTVVM
401: GKVESGSIRE GDSLIVMPNK EHVKVVAIYC DEDKVKRAGP GENLRVRITG IEDEDILAGF VLSSTVKPVP AVTEFVAQLQ ILELLDNAIF TAGYKAILHI
501: HAVVEECEII ELISQIDMKT RKPMKKKILF VKNGAAVVCR IQVSNSICVE KFSDFPQLGR FTLRTEGKTI AVGKVTALSG ASSSA

Best Arabidopsis Sequence Match ( AT1G18070.1 )
(BLAST)

001: MDLEAEIRAL QLESADENNG VVIPEVHNSH EVENLDKAPE DLKDEVQESI PVPDEQEASE DHDEVMLHPV HNPAKAKEKA AQEKAAKEEA EDVAEANKKR
101: HLNVVFIGHV DAGKSTIGGQ ILFLSGQVDD RQIQKYEKEA KDKSRESWYM AYIMDTNEEE RLKGKTVEVG RAHFETESTR FTILDAPGHK SYVPNMISGA
201: SQADIGVLVI SARKGEFETG YERGGQTREH VQLAKTLGVS KLIVVVNKMD DPTVNWSKER YDEIEQKMVP FLKASGYNTK KDVVFLPISG LMGKNMDQRM
301: GQEICPWWSG PSFFEVLDSI EIPPRDPNGP FRMPIIDKFK DMGTVVMGKV ESGSIREGDS LVVMPNKEQV KVVAIYCDED KVKRAGPGEN LRVRITGIED
401: EDILSGFVLS SIVNPVPAVT EFVAQLQILE LLDNAIFTAG YKAILHIHAV VEECEIIELK SQIDLKTRKP MKKKVLFVKN GAAVVCRIQV TNSICIEKFS
501: DFPQLGRFTL RTEGKTIAVG KVTELLSSVS SA

Arabidopsis Description

T10F20.8 protein [Source:UniProtKB/TrEMBL;Acc:Q9LMS7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.