CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY22710	Canola	cytosol	74.82	99.53
CDY22711	Canola	cytosol	74.82	99.53
CDY06288	Canola	cytosol	19.89	98.26
CDY06290	Canola	cytosol	19.89	98.26
CDY67376	Canola	cytosol	19.89	98.26
CDY69678	Canola	cytosol	19.89	98.26
CDY09211	Canola	cytosol	73.24	97.2
CDY10804	Canola	cytosol	73.24	97.2
CDY34479	Canola	cytosol	73.24	97.2
CDY61938	Canola	cytosol	73.24	97.2
CDX88757	Canola	cytosol	68.49	97.01
Bra030707.1-P	Field mustard	cytosol	99.82	96.1
CDY67375	Canola	cytosol	46.48	94.96
GSMUA_Achr10P...	Banana	cytosol	47.01	94.68
GSMUA_Achr10P...	Banana	cytosol	46.48	94.62
CDY06287	Canola	cytosol	37.32	93.39
CDY06289	Canola	cytosol	41.9	92.97
CDX70032	Canola	cytosol	55.46	91.57
KRG93959	Soybean	nucleus	72.01	91.5
KRH58241	Soybean	nucleus	72.01	91.5
HORVU4Hr1G056830.1	Barley	cytosol	47.18	91.47
KRH07098	Soybean	cytosol, mitochondrion, nucleus	71.65	91.05
Os03t0177400-01	Rice	cytosol	71.65	91.05
Os03t0177500-01	Rice	cytosol	71.65	91.05
Os03t0177900-01	Rice	plasma membrane	71.65	91.05
Os03t0178000-02	Rice	cytosol	71.65	91.05
GSMUA_Achr6P04090_001	Banana	cytosol	31.51	90.86
VIT_06s0004g03240.t01	Wine grape	cytosol	71.48	90.83
Solyc06g005060.2.1	Tomato	cytosol	71.48	90.62
Solyc06g009970.2.1	Tomato	extracellular, nucleus, plastid	71.48	90.62
KXG20293	Sorghum	cytosol	71.3	90.6
KXG20294	Sorghum	cytosol	71.3	90.6
KXG20296	Sorghum	cytosol	71.3	90.6
KXG20299	Sorghum	cytosol	71.3	90.6
PGSC0003DMT400050663	Potato	cytosol	71.3	90.6
Zm00001d036904_P001	Maize	cytosol	71.3	90.6
CDX93604	Canola	cytosol	73.24	90.43
KRH34904	Soybean	nucleus	71.3	90.4
Solyc11g069700.1.1	Tomato	nucleus	71.13	90.38
Zm00001d046449_P003	Maize	cytosol	70.95	90.16
PGSC0003DMT400053547	Potato	cytosol	70.95	89.96
PGSC0003DMT400053553	Potato	cytosol	70.95	89.96
PGSC0003DMT400059830	Potato	cytosol	70.95	89.96
PGSC0003DMT400059832	Potato	cytosol	70.95	89.96
KRH04781	Soybean	endoplasmic reticulum	70.77	89.93
KRH57863	Soybean	nucleus	70.77	89.93
PGSC0003DMT400020968	Potato	cytosol	70.77	89.93
VIT_08s0040g02330.t01	Wine grape	cytosol	70.6	89.71
GSMUA_Achr3P17840_001	Banana	cytosol	23.94	89.47
Zm00001d037905_P010	Maize	cytosol	70.95	89.36
Solyc06g009960.1.1	Tomato	cytosol	64.44	89.27
HORVU4Hr1G056740.1	Barley	cytosol	70.25	89.26
TraesCS4A01G107600.1	Wheat	cytosol	70.25	89.26
TraesCS4A01G107700.1	Wheat	cytosol	70.25	89.26
TraesCS4B01G196900.1	Wheat	golgi	70.25	89.26
TraesCS5A01G415400.1	Wheat	cytosol	70.25	89.26
TraesCS5A01G415600.1	Wheat	cytosol	70.25	89.26
TraesCS5B01G418100.1	Wheat	cytosol	70.25	89.26
TraesCS5B01G418200.1	Wheat	cytosol	70.25	89.26
Zm00001d009868_P015	Maize	cytosol	70.77	89.14
Zm00001d009870_P008	Maize	cytosol	70.77	89.14
Zm00001d037873_P010	Maize	cytosol	70.77	89.14
Zm00001d037875_P014	Maize	cytosol	70.6	88.91
Zm00001d037877_P014	Maize	cytosol	70.6	88.91
CDX95108	Canola	cytosol, extracellular	75.88	88.5
VIT_13s0019g03920.t01	Wine grape	cytosol	70.6	88.13
GSMUA_AchrUn_...	Banana	cytosol	32.22	87.56
HORVU5Hr1G100200.3	Barley	mitochondrion	70.25	85.99
HORVU5Hr1G100700.3	Barley	plasma membrane	70.25	85.81
GSMUA_Achr2P19000_001	Banana	cytosol	11.44	84.42
CDY09214	Canola	cytosol	23.77	84.38
Zm00001d037882_P001	Maize	cytosol	27.29	83.78
HORVU6Hr1G085320.3	Barley	cytosol	64.79	83.45
HORVU4Hr1G056820.1	Barley	plasma membrane	69.89	83.4
TraesCS4B01G196800.2	Wheat	golgi	70.25	82.61
GSMUA_Achr5P24440_001	Banana	cytosol	18.31	81.89
HORVU6Hr1G085370.1	Barley	cytosol	64.26	80.75
GSMUA_Achr7P15510_001	Banana	cytosol, plasma membrane	57.92	80.64
VIT_06s0004g03220.t01	Wine grape	cytosol	71.48	78.38
HORVU5Hr1G051280.1	Barley	cytosol	14.08	76.92
Zm00001d009887_P001	Maize	cytosol	19.37	75.34
OQU75582	Sorghum	cytosol	16.55	75.2
OQU75597	Sorghum	cytosol	22.36	72.57
GSMUA_Achr10P...	Banana	cytosol, plastid	26.58	70.23
VIT_19s0014g04110.t01	Wine grape	cytosol	13.73	64.46
GSMUA_Achr6P02020_001	Banana	mitochondrion	38.38	63.01
TraesCS2D01G323300.1	Wheat	cytosol, mitochondrion	9.33	50.0
CDX96737	Canola	cytosol	26.23	28.76
CDX83874	Canola	endoplasmic reticulum	25.7	28.19
CDY19192	Canola	cytosol	25.7	26.89
CDY61091	Canola	cytosol	6.34	26.87
CDY21721	Canola	cytosol	26.58	26.22
CDX81859	Canola	endoplasmic reticulum, golgi, plasma membrane	26.58	25.86
CDY22085	Canola	mitochondrion	20.42	25.49
CDX90912	Canola	mitochondrion	20.25	25.39
CDY21923	Canola	mitochondrion	20.25	25.22
CDY17978	Canola	mitochondrion	20.07	25.17
CDX82758	Canola	plastid	12.5	25.0
CDY26187	Canola	golgi, vacuole	25.7	24.96
CDX98668	Canola	plastid	11.44	23.47
CDY49022	Canola	plastid	14.08	23.32
CDX78392	Canola	cytosol	25.7	23.25
CDY49485	Canola	plastid	13.91	23.1
CDX94002	Canola	plastid	11.44	22.97
CDX70362	Canola	cytosol	26.23	22.89
CDX78988	Canola	plastid	11.44	21.52
CDY54570	Canola	plastid	11.62	21.15
CDY40108	Canola	cytosol	26.58	21.0
CDY31442	Canola	plastid	11.44	20.83
CDX85751	Canola	cytosol	26.06	20.73
CDY62618	Canola	endoplasmic reticulum, mitochondrion	12.15	18.5

Protein Annotations

MapMan:17.5.1.1	Gene3D:2.40.30.10	Gene3D:3.40.50.300	GO:A0A078J6X1	UniProt:A0A078J6X1	EnsemblPlants:CDY58828
ProteinID:CDY58828	ProteinID:CDY58828.1	ncoils:Coil	InterPro:EFTu-like_2	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003746	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488
GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006412
GO:GO:0006414	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016787	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00025175001	InterPro:IPR000795	InterPro:P-loop_NTPase	PFAM:PF00009
PFAM:PF03143	PFAM:PF03144	PRINTS:PR00315	PFscan:PS51722	PANTHER:PTHR23115	PANTHER:PTHR23115:SF230
SUPFAM:SSF50447	SUPFAM:SSF50465	SUPFAM:SSF52540	InterPro:TF_GTP-bd_dom	TIGRFAMs:TIGR00483	InterPro:Transl_B-barrel_sf
InterPro:Transl_elong_EF1A/Init_IF2_C	InterPro:Transl_elong_EF1A_euk/arc	InterPro:Transl_elong_EFTu/EF1A_C	UniParc:UPI0004EF479F	SEG:seg	:

Description

BnaAnng15460DBnaAnng15460D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J6X1]

Coordinates

chrLK033702:-:17631..22152

Molecular Weight (calculated)

62950.3 Da

IEP (calculated)

9.628

GRAVY (calculated)

-0.442

Length

568 amino acids

Sequence
(BLAST)

001: MGKEKFHINI VVIGHVDSGK STTTGHLIYK LGGIDKRVIE RFEKEAAEMN KRSFKYAWVL DKLKAELIDA PGHRDFIKNM ITGTSQADCA VLIIDSTTGG
101: FEAGISKDGQ TREHALLAFT LGVKQMICCC NKMDATTPKY SKARYDEIIK EVSSYLKKVG YNPDKIPFVP ISGFEGDNMI ERSTNLDWYK GPTLLEALDQ
201: INEPKRPSDK PLRLPLQDVY KIGGIGTVPV GRVETGMLKP GMVVTFAPSG LTTEVKSVEM HHESLVEALP GDNVGFNVKN VAVKDLKRGY VASNSKDDPA
301: KGAANFTSQV IIMNHPGQIG NGYAPVLDCH TSHIAVKFSE ILTKIDRRSG KEIEKEPKFL KNGDAGMVKM TPTKPMVVET FSEYPPLGRF AVRDMRQTVA
401: VGVIKSVDKK DPTGAKVTKA AVKKVSCLVV VMEEEPILSR LDRIDIMVRK LEEMRLGSSR RSSSPSTPSS GTQPSSSLDL SSPRSIGKVQ CRSMEQVMEE
501: TERKGSLLER LNNVEEQVLK LCLHFEKEVE EEERKKDDKK KKKGLRKFVD KVVGSSSPTK SHSKSWRC

Best Arabidopsis Sequence Match ( AT1G07930.1 )
(BLAST)

001: MGKEKFHINI VVIGHVDSGK STTTGHLIYK LGGIDKRVIE RFEKEAAEMN KRSFKYAWVL DKLKAERERG ITIDIALWKF ETTKYYCTVI DAPGHRDFIK
101: NMITGTSQAD CAVLIIDSTT GGFEAGISKD GQTREHALLA FTLGVKQMIC CCNKMDATTP KYSKARYDEI IKEVSSYLKK VGYNPDKIPF VPISGFEGDN
201: MIERSTNLDW YKGPTLLEAL DQINEPKRPS DKPLRLPLQD VYKIGGIGTV PVGRVETGMI KPGMVVTFAP TGLTTEVKSV EMHHESLLEA LPGDNVGFNV
301: KNVAVKDLKR GYVASNSKDD PAKGAANFTS QVIIMNHPGQ IGNGYAPVLD CHTSHIAVKF SEILTKIDRR SGKEIEKEPK FLKNGDAGMV KMTPTKPMVV
401: ETFSEYPPLG RFAVRDMRQT VAVGVIKSVD KKDPTGAKVT KAAVKKGAK

Arabidopsis Description

A1Elongation factor 1-alpha 4 [Source:UniProtKB/Swiss-Prot;Acc:Q8GTY0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.