Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d005029_P001 | |
| Zm00001d052380_P001 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d009870_P008 | Maize | cytosol | 99.33 | 99.33 |
| GSMUA_Achr5P24440_001 | Banana | cytosol | 27.94 | 99.21 |
| Zm00001d037905_P010 | Maize | cytosol | 99.11 | 99.11 |
| Zm00001d037873_P010 | Maize | cytosol | 98.89 | 98.89 |
| CDY09214 | Canola | cytosol | 35.03 | 98.75 |
| Zm00001d037875_P014 | Maize | cytosol | 98.67 | 98.67 |
| Zm00001d037877_P014 | Maize | cytosol | 98.67 | 98.67 |
| Zm00001d046449_P003 | Maize | cytosol | 97.56 | 98.43 |
| HORVU5Hr1G051280.1 | Barley | cytosol | 22.62 | 98.08 |
| Os03t0177400-01 | Rice | cytosol | 97.12 | 97.99 |
| Os03t0177500-01 | Rice | cytosol | 97.12 | 97.99 |
| Os03t0177900-01 | Rice | plasma membrane | 97.12 | 97.99 |
| Os03t0178000-02 | Rice | cytosol | 97.12 | 97.99 |
| Zm00001d036904_P001 | Maize | cytosol | 97.12 | 97.99 |
| KRG93959 | Soybean | nucleus | 96.45 | 97.32 |
| Zm00001d037882_P001 | Maize | cytosol | 39.91 | 97.3 |
| KRH58241 | Soybean | nucleus | 96.23 | 97.09 |
| KRH07098 | Soybean | cytosol, mitochondrion, nucleus | 96.01 | 96.87 |
| GSMUA_Achr10P... | Banana | cytosol | 60.53 | 96.81 |
| PGSC0003DMT400050663 | Potato | cytosol | 95.79 | 96.64 |
| Solyc11g069700.1.1 | Tomato | nucleus | 95.57 | 96.42 |
| GSMUA_Achr10P... | Banana | cytosol | 59.65 | 96.42 |
| Solyc06g005060.2.1 | Tomato | cytosol | 95.57 | 96.21 |
| Solyc06g009970.2.1 | Tomato | extracellular, nucleus, plastid | 95.57 | 96.21 |
| KRH57863 | Soybean | nucleus | 95.34 | 96.2 |
| GSMUA_Achr2P19000_001 | Banana | cytosol | 16.41 | 96.1 |
| CDY06287 | Canola | cytosol | 48.34 | 96.04 |
| HORVU4Hr1G056740.1 | Barley | cytosol | 95.12 | 95.97 |
| TraesCS4B01G196900.1 | Wheat | golgi | 95.12 | 95.97 |
| TraesCS4D01G197100.1 | Wheat | cytosol | 95.12 | 95.97 |
| TraesCS4D01G197200.1 | Wheat | cytosol | 95.12 | 95.97 |
| TraesCS5B01G418100.1 | Wheat | cytosol | 95.12 | 95.97 |
| TraesCS5B01G418200.1 | Wheat | cytosol | 95.12 | 95.97 |
| TraesCS5D01G423300.1 | Wheat | cytosol | 95.12 | 95.97 |
| TraesCS5D01G423400.1 | Wheat | cytosol | 95.12 | 95.97 |
| Zm00001d006596_P001 | Maize | cytosol | 95.12 | 95.97 |
| Zm00001d021788_P001 | Maize | cytosol, extracellular, plasma membrane, plastid | 95.12 | 95.97 |
| Bra031601.1-P | Field mustard | cytosol | 42.13 | 95.96 |
| KRH34904 | Soybean | nucleus | 95.12 | 95.76 |
| KRH04781 | Soybean | endoplasmic reticulum | 94.9 | 95.75 |
| PGSC0003DMT400020968 | Potato | cytosol | 94.9 | 95.75 |
| VIT_06s0004g03240.t01 | Wine grape | cytosol | 94.9 | 95.75 |
| Solyc06g009960.1.1 | Tomato | cytosol | 86.92 | 95.61 |
| TraesCS4A01G107600.1 | Wheat | cytosol | 94.68 | 95.53 |
| TraesCS4A01G107700.1 | Wheat | cytosol | 94.68 | 95.53 |
| TraesCS5A01G415400.1 | Wheat | cytosol | 94.68 | 95.53 |
| TraesCS5A01G415600.1 | Wheat | cytosol | 94.68 | 95.53 |
| PGSC0003DMT400053547 | Potato | cytosol | 94.68 | 95.31 |
| PGSC0003DMT400053553 | Potato | cytosol | 94.68 | 95.31 |
| PGSC0003DMT400059830 | Potato | cytosol | 94.68 | 95.31 |
| PGSC0003DMT400059832 | Potato | cytosol | 94.68 | 95.31 |
| VIT_08s0040g02330.t01 | Wine grape | cytosol | 94.46 | 95.3 |
| AT1G07920.1 | Thale cress | cytosol | 94.68 | 95.1 |
| AT1G07930.1 | Thale cress | cytosol | 94.68 | 95.1 |
| AT1G07940.3 | Thale cress | cytosol | 94.68 | 95.1 |
| AT5G60390.2 | Thale cress | cytosol | 94.68 | 95.1 |
| CDY67375 | Canola | cytosol | 58.54 | 94.96 |
| CDX88757 | Canola | cytosol | 84.26 | 94.76 |
| Bra002483.1-P | Field mustard | cytosol | 94.23 | 94.65 |
| Bra018669.1-P | Field mustard | cytosol | 94.23 | 94.65 |
| Bra031602.1-P | Field mustard | cytosol | 94.23 | 94.65 |
| CDY06289 | Canola | cytosol | 53.66 | 94.53 |
| Bra018242.1-P | Field mustard | cytosol | 94.01 | 94.43 |
| Bra020253.1-P | Field mustard | cytosol | 94.01 | 94.43 |
| CDY09211 | Canola | cytosol | 89.58 | 94.39 |
| CDY10804 | Canola | cytosol | 89.58 | 94.39 |
| CDY34479 | Canola | cytosol | 89.58 | 94.39 |
| CDY61938 | Canola | cytosol | 89.58 | 94.39 |
| Bra031605.1-P | Field mustard | cytosol | 89.14 | 94.15 |
| CDY22710 | Canola | cytosol | 89.14 | 94.15 |
| CDY22711 | Canola | cytosol | 89.14 | 94.15 |
| HORVU4Hr1G056830.1 | Barley | cytosol | 60.98 | 93.86 |
| Bra006661.1-P | Field mustard | cytosol | 93.35 | 93.76 |
| Bra020251.1-P | Field mustard | cytosol | 85.59 | 93.69 |
| VIT_13s0019g03920.t01 | Wine grape | cytosol | 94.46 | 93.63 |
| HORVU5Hr1G100200.3 | Barley | mitochondrion | 95.12 | 92.46 |
| HORVU5Hr1G100700.3 | Barley | plasma membrane | 95.12 | 92.26 |
| GSMUA_Achr6P04090_001 | Banana | cytosol | 40.13 | 91.88 |
| CDY06288 | Canola | cytosol | 23.06 | 90.43 |
| CDY06290 | Canola | cytosol | 23.06 | 90.43 |
| CDY67376 | Canola | cytosol | 23.06 | 90.43 |
| CDY69678 | Canola | cytosol | 23.06 | 90.43 |
| Zm00001d009887_P001 | Maize | cytosol | 29.27 | 90.41 |
| HORVU6Hr1G085320.3 | Barley | cytosol | 88.25 | 90.25 |
| HORVU4Hr1G056820.1 | Barley | plasma membrane | 94.68 | 89.71 |
| GSMUA_Achr3P17840_001 | Banana | cytosol | 30.16 | 89.47 |
| GSMUA_AchrUn_... | Banana | cytosol | 41.46 | 89.47 |
| TraesCS4B01G196800.2 | Wheat | golgi | 95.12 | 88.82 |
| HORVU6Hr1G085370.1 | Barley | cytosol | 88.03 | 87.83 |
| CDX93604 | Canola | cytosol | 89.58 | 87.83 |
| CDX70032 | Canola | cytosol | 66.74 | 87.5 |
| CDX95108 | Canola | cytosol, extracellular | 94.23 | 87.27 |
| GSMUA_Achr7P15510_001 | Banana | cytosol, plasma membrane | 78.71 | 87.01 |
| TraesCS2D01G320300.1 | Wheat | cytosol, nucleus, plastid | 30.38 | 86.16 |
| TraesCS2D01G320500.1 | Wheat | cytosol | 68.74 | 84.01 |
| VIT_06s0004g03220.t01 | Wine grape | cytosol | 94.9 | 82.63 |
| GSMUA_Achr10P... | Banana | cytosol, plastid | 38.8 | 81.4 |
| VIT_19s0014g04110.t01 | Wine grape | cytosol | 21.73 | 80.99 |
| Bra030707.1-P | Field mustard | cytosol | 94.23 | 72.03 |
| CDY58828 | Canola | cytosol | 89.14 | 70.77 |
| GSMUA_Achr6P02020_001 | Banana | mitochondrion | 52.33 | 68.21 |
| Zm00001d004172_P005 | Maize | cytosol | 36.36 | 30.31 |
| Zm00001d034856_P003 | Maize | mitochondrion | 27.94 | 27.88 |
| Zm00001d025100_P005 | Maize | cytosol | 33.7 | 27.09 |
| Zm00001d017092_P001 | Maize | plastid | 26.39 | 25.59 |
| Zm00001d050969_P001 | Maize | plastid | 26.39 | 25.54 |
| Zm00001d012846_P005 | Maize | mitochondrion | 25.5 | 25.33 |
| Zm00001d001827_P005 | Maize | cytosol | 33.92 | 22.01 |
| Zm00001d040673_P001 | Maize | mitochondrion | 5.54 | 21.93 |
| Zm00001d026213_P001 | Maize | cytosol | 33.48 | 18.19 |
Protein Annotations
| EntrezGene:103635497 | MapMan:17.5.1.1 | Gene3D:2.40.30.10 | Gene3D:3.40.50.300 | UniProt:A0A1D6FMI2 | ProteinID:AQK92865.1 |
| InterPro:EFTu-like_2 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003746 |
| GO:GO:0003824 | GO:GO:0003924 | GO:GO:0005488 | GO:GO:0005525 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006412 | GO:GO:0006414 | GO:GO:0008135 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016787 | GO:GO:0019538 | InterPro:G_TR_CS |
| InterPro:IPR000795 | HAMAP:MF_00118_A | InterPro:P-loop_NTPase | PFAM:PF00009 | PFAM:PF03143 | PFAM:PF03144 |
| PRINTS:PR00315 | ScanProsite:PS00301 | PFscan:PS51722 | PANTHER:PTHR23115 | PANTHER:PTHR23115:SF230 | SUPFAM:SSF50447 |
| SUPFAM:SSF50465 | SUPFAM:SSF52540 | InterPro:TF_GTP-bd_dom | TIGRFAMs:TIGR00483 | InterPro:Transl_B-barrel_sf | InterPro:Transl_elong_EF1A/Init_IF2_C |
| InterPro:Transl_elong_EF1A_euk/arc | InterPro:Transl_elong_EFTu/EF1A_C | UniParc:UPI0008430D53 | EnsemblPlantsGene:Zm00001d009868 | EnsemblPlants:Zm00001d009868_P015 | EnsemblPlants:Zm00001d009868_T015 |
| SEG:seg | : | : | : | : | : |
Description
Elongation factor 1-alpha
Coordinates
chr8:-:86006294..86008459
Molecular Weight (calculated)
49660.3 Da
IEP (calculated)
9.637
GRAVY (calculated)
-0.316
Length
451 amino acids
Sequence
(BLAST)
(BLAST)
001: MGKEKSHINI VVIGHVDSGK STTTGHLIYK LGGIDKRVIE RFEKEAAEMN KRSFKYAWVL DKLKAERERG ITIDIALWKF ETTKYYCTVI DAPGHRDFIK
101: NMITGTSQAD CAVLIIDSTT GGFEAGISKD GQTREHALLA FTLGVKQMIC CCNKVCSKMD ATTPKYSKAR YDEIVKEVSS YLKKVGYNPD KIAFVPISGF
201: EGDNMIERST NLDWYKGPTL LEALDQITEP KRPSDKPLRL PLQDVYKIGG IGTVPVGRVE TGVIKPGMVV TFGPTGLTTE VKSVEMHHEA LQEALPGDNV
301: GFNVKNVAVK DIKRGYVASN SKDDPAKEAA SFTSQVIIMN HPGQIGNGYA PVLDCHTSHI AVKFAELITK IDRRSGKELE KEPKFLKNGD AGMVKMIPTK
401: PMVVETFSQY PPLGRFAVRD MRQTVAVGVI KSVEKKDPTG AKVTKAAAKK K
101: NMITGTSQAD CAVLIIDSTT GGFEAGISKD GQTREHALLA FTLGVKQMIC CCNKVCSKMD ATTPKYSKAR YDEIVKEVSS YLKKVGYNPD KIAFVPISGF
201: EGDNMIERST NLDWYKGPTL LEALDQITEP KRPSDKPLRL PLQDVYKIGG IGTVPVGRVE TGVIKPGMVV TFGPTGLTTE VKSVEMHHEA LQEALPGDNV
301: GFNVKNVAVK DIKRGYVASN SKDDPAKEAA SFTSQVIIMN HPGQIGNGYA PVLDCHTSHI AVKFAELITK IDRRSGKELE KEPKFLKNGD AGMVKMIPTK
401: PMVVETFSQY PPLGRFAVRD MRQTVAVGVI KSVEKKDPTG AKVTKAAAKK K
001: MGKEKFHINI VVIGHVDSGK STTTGHLIYK LGGIDKRVIE RFEKEAAEMN KRSFKYAWVL DKLKAERERG ITIDIALWKF ETTKYYCTVI DAPGHRDFIK
101: NMITGTSQAD CAVLIIDSTT GGFEAGISKD GQTREHALLA FTLGVKQMIC CCNKMDATTP KYSKARYDEI IKEVSSYLKK VGYNPDKIPF VPISGFEGDN
201: MIERSTNLDW YKGPTLLEAL DQINEPKRPS DKPLRLPLQD VYKIGGIGTV PVGRVETGMI KPGMVVTFAP TGLTTEVKSV EMHHESLLEA LPGDNVGFNV
301: KNVAVKDLKR GYVASNSKDD PAKGAANFTS QVIIMNHPGQ IGNGYAPVLD CHTSHIAVKF SEILTKIDRR SGKEIEKEPK FLKNGDAGMV KMTPTKPMVV
401: ETFSEYPPLG RFAVRDMRQT VAVGVIKSVD KKDPTGAKVT KAAVKKGAK
101: NMITGTSQAD CAVLIIDSTT GGFEAGISKD GQTREHALLA FTLGVKQMIC CCNKMDATTP KYSKARYDEI IKEVSSYLKK VGYNPDKIPF VPISGFEGDN
201: MIERSTNLDW YKGPTLLEAL DQINEPKRPS DKPLRLPLQD VYKIGGIGTV PVGRVETGMI KPGMVVTFAP TGLTTEVKSV EMHHESLLEA LPGDNVGFNV
301: KNVAVKDLKR GYVASNSKDD PAKGAANFTS QVIIMNHPGQ IGNGYAPVLD CHTSHIAVKF SEILTKIDRR SGKEIEKEPK FLKNGDAGMV KMTPTKPMVV
401: ETFSEYPPLG RFAVRDMRQT VAVGVIKSVD KKDPTGAKVT KAAVKKGAK
Arabidopsis Description
A1Elongation factor 1-alpha 4 [Source:UniProtKB/Swiss-Prot;Acc:Q8GTY0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.