Factsheet for TraesCS2D01G320300.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU5Hr1G051280.1	Barley	cytosol	58.49	89.42
OQU75582	Sorghum	cytosol	61.01	77.6
Zm00001d009887_P001	Maize	cytosol	70.44	76.71
Zm00001d037882_P001	Maize	cytosol	83.02	71.35
OQU75597	Sorghum	cytosol	76.73	69.71
TraesCS2D01G323300.1	Wheat	cytosol, mitochondrion	39.62	59.43
TraesCS2D01G320500.1	Wheat	cytosol	98.11	42.28
KXG20293	Sorghum	cytosol	85.53	30.43
Zm00001d046449_P003	Maize	cytosol	85.53	30.43
Zm00001d036904_P001	Maize	cytosol	85.53	30.43
TraesCS5D01G423400.1	Wheat	cytosol	85.53	30.43
TraesCS5D01G423300.1	Wheat	cytosol	85.53	30.43
TraesCS4D01G197200.1	Wheat	cytosol	85.53	30.43
TraesCS4D01G197100.1	Wheat	cytosol	85.53	30.43
KXG20294	Sorghum	cytosol	85.53	30.43
KXG20296	Sorghum	cytosol	85.53	30.43
Os03t0178000-02	Rice	cytosol	85.53	30.43
Os03t0177900-01	Rice	plasma membrane	85.53	30.43
Os03t0177500-01	Rice	cytosol	85.53	30.43
KXG20299	Sorghum	cytosol	85.53	30.43
Os03t0177400-01	Rice	cytosol	85.53	30.43
Zm00001d009868_P015	Maize	cytosol	86.16	30.38
Zm00001d037905_P010	Maize	cytosol	86.16	30.38
Zm00001d037877_P014	Maize	cytosol	86.16	30.38
Zm00001d037875_P014	Maize	cytosol	86.16	30.38
Zm00001d037873_P010	Maize	cytosol	86.16	30.38
Zm00001d009870_P008	Maize	cytosol	86.16	30.38
TraesCS2D01G080900.1	Wheat	cytosol, golgi, unclear	84.91	30.2
TraesCS2D01G080800.1	Wheat	cytosol	84.91	30.2
TraesCS2D01G075300.1	Wheat	cytosol	44.03	13.13
TraesCS5D01G542300.1	Wheat	mitochondrion	30.82	10.86
TraesCS2D01G443300.1	Wheat	cytosol	44.03	10.29
TraesCS6D01G193000.1	Wheat	nucleus, plastid	30.19	10.21
TraesCS2D01G562000.1	Wheat	cytosol	45.28	8.83

Protein Annotations

EnsemblPlants:TraesCS2D01G320300.1	EnsemblPlantsGene:TraesCS2D01G320300	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0016787	InterPro:IPR000795	InterPro:P-loop_NTPase
InterPro:TF_GTP-bd_dom	PANTHER:PTHR23115	PANTHER:PTHR23115:SF230	PFAM:PF00009	PFscan:PS51722	PRINTS:PR00315
SUPFAM:SSF52540	MapMan:35.1	:	:	:	:

Description

No Description!

Coordinates

chr2D:-:411417729..411419214

Molecular Weight (calculated)

17460.1 Da

IEP (calculated)

7.373

GRAVY (calculated)

-0.091

Length

159 amino acids

Sequence
(BLAST)

001: MVKEKSRLNI VVIGHVNSGK STTTGHLICL LGGVDRLAIE RLEKEAAEMN KSSFKYAWVL DKLKAERERG NTIDITLSKF ETTNYLCTVI DAPGHRDFIK
101: NMITGTSQAD CAVLIIDSTI GGFESGFSQD GQTREHALLA FTLGVKQMIC CCNKGDNMV

Best Arabidopsis Sequence Match ( AT1G07930.1 )
(BLAST)

001: MGKEKFHINI VVIGHVDSGK STTTGHLIYK LGGIDKRVIE RFEKEAAEMN KRSFKYAWVL DKLKAERERG ITIDIALWKF ETTKYYCTVI DAPGHRDFIK
101: NMITGTSQAD CAVLIIDSTT GGFEAGISKD GQTREHALLA FTLGVKQMIC CCNKMDATTP KYSKARYDEI IKEVSSYLKK VGYNPDKIPF VPISGFEGDN
201: MIERSTNLDW YKGPTLLEAL DQINEPKRPS DKPLRLPLQD VYKIGGIGTV PVGRVETGMI KPGMVVTFAP TGLTTEVKSV EMHHESLLEA LPGDNVGFNV
301: KNVAVKDLKR GYVASNSKDD PAKGAANFTS QVIIMNHPGQ IGNGYAPVLD CHTSHIAVKF SEILTKIDRR SGKEIEKEPK FLKNGDAGMV KMTPTKPMVV
401: ETFSEYPPLG RFAVRDMRQT VAVGVIKSVD KKDPTGAKVT KAAVKKGAK

Arabidopsis Description

A1Elongation factor 1-alpha 4 [Source:UniProtKB/Swiss-Prot;Acc:Q8GTY0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.