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Sorghum
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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 1
  • cytosol 2
  • mitochondrion 1
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, nucleus, plastid
BaCelLo:nucleus
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:plastid
PPI

Inferred distinct locusB in Crop

locusBlocations
KXG22896
OQU82754

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G07920.1 KXG22896 AT3G54220.1 19228333
AT1G07920.1 OQU82754 AT3G54220.1 19228333
AT1G07930.1 KXG22896 AT3G54220.1 19228333
AT1G07930.1 OQU82754 AT3G54220.1 19228333
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
OQU75582 Sorghum cytosol 71.43 100.0
GSMUA_Achr2P19000_001 Banana cytosol 40.0 90.91
CDY09214 Canola cytosol 82.86 90.62
HORVU5Hr1G051280.1 Barley cytosol 53.71 90.38
GSMUA_Achr5P24440_001 Banana cytosol 62.29 85.83
VIT_19s0014g04110.t01 Wine grape cytosol 54.29 78.51
TraesCS2D01G320300.1 Wheat cytosol, nucleus, plastid 69.71 76.73
Bra031601.1-P Field mustard cytosol 82.86 73.23
GSMUA_Achr10P... Banana cytosol, plastid 83.43 67.91
CDY06287 Canola cytosol 72.0 55.51
CDY06289 Canola cytosol 72.0 49.22
CDY67375 Canola cytosol 72.0 45.32
GSMUA_Achr6P02020_001 Banana mitochondrion 82.86 41.91
TraesCS2D01G320500.1 Wheat cytosol 71.43 33.88
HORVU4Hr1G056740.1 Barley cytosol 86.29 33.78
KRG93959 Soybean nucleus 86.29 33.78
Os03t0177400-01 Rice cytosol 86.29 33.78
Os03t0177500-01 Rice cytosol 86.29 33.78
Os03t0177900-01 Rice plasma membrane 86.29 33.78
Os03t0178000-02 Rice cytosol 86.29 33.78
PGSC0003DMT400020968 Potato cytosol 86.29 33.78
TraesCS4A01G107600.1 Wheat cytosol 86.29 33.78
TraesCS4A01G107700.1 Wheat cytosol 86.29 33.78
TraesCS4B01G196900.1 Wheat golgi 86.29 33.78
TraesCS4D01G197100.1 Wheat cytosol 86.29 33.78
TraesCS4D01G197200.1 Wheat cytosol 86.29 33.78
TraesCS5A01G415400.1 Wheat cytosol 86.29 33.78
TraesCS5A01G415600.1 Wheat cytosol 86.29 33.78
TraesCS5B01G418100.1 Wheat cytosol 86.29 33.78
TraesCS5B01G418200.1 Wheat cytosol 86.29 33.78
TraesCS5D01G423300.1 Wheat cytosol 86.29 33.78
TraesCS5D01G423400.1 Wheat cytosol 86.29 33.78
PGSC0003DMT400053547 Potato cytosol 86.29 33.71
PGSC0003DMT400053553 Potato cytosol 86.29 33.71
PGSC0003DMT400059830 Potato cytosol 86.29 33.71
PGSC0003DMT400059832 Potato cytosol 86.29 33.71
Solyc06g005060.2.1 Tomato cytosol 86.29 33.71
Solyc06g009970.2.1 Tomato extracellular, nucleus, plastid 86.29 33.71
KRH04781 Soybean endoplasmic reticulum 85.71 33.56
KRH07098 Soybean cytosol, mitochondrion, nucleus 85.71 33.56
KRH57863 Soybean nucleus 85.71 33.56
KXG20293 Sorghum cytosol 85.71 33.56
KXG20294 Sorghum cytosol 85.71 33.56
KXG20296 Sorghum cytosol 85.71 33.56
KXG20299 Sorghum cytosol 85.71 33.56
Zm00001d036904_P001 Maize cytosol 85.71 33.56
Zm00001d046449_P003 Maize cytosol 85.71 33.56
GSMUA_Achr3P17840_001 Banana cytosol 29.14 33.55
EER97380 Sorghum cytosol 85.14 33.33
KRH58241 Soybean nucleus 85.14 33.33
PGSC0003DMT400050663 Potato cytosol 85.14 33.33
Solyc11g069700.1.1 Tomato nucleus 85.14 33.33
VIT_06s0004g03240.t01 Wine grape cytosol 85.14 33.33
KRH34904 Soybean nucleus 85.14 33.26
AT1G07920.1 Thale cress cytosol 85.14 33.18
AT1G07930.1 Thale cress cytosol 85.14 33.18
AT1G07940.3 Thale cress cytosol 85.14 33.18
AT5G60390.2 Thale cress cytosol 85.14 33.18
Bra002483.1-P Field mustard cytosol 85.14 33.18
Bra006661.1-P Field mustard cytosol 85.14 33.18
Bra018242.1-P Field mustard cytosol 85.14 33.18
Bra018669.1-P Field mustard cytosol 85.14 33.18
Bra031602.1-P Field mustard cytosol 85.14 33.18
VIT_08s0040g02330.t01 Wine grape cytosol 84.57 33.11
Bra020253.1-P Field mustard cytosol 84.57 32.96
VIT_13s0019g03920.t01 Wine grape cytosol 85.14 32.75
HORVU5Hr1G100200.3 Barley mitochondrion 86.29 32.54
HORVU5Hr1G100700.3 Barley plasma membrane 86.29 32.47
CDX88757 Canola cytosol 74.29 32.42
Solyc06g009960.1.1 Tomato cytosol 75.43 32.2
HORVU4Hr1G056820.1 Barley plasma membrane 85.71 31.51
TraesCS4B01G196800.2 Wheat golgi 86.29 31.26
HORVU6Hr1G085320.3 Barley cytosol 77.14 30.61
CDX95108 Canola cytosol, extracellular 85.14 30.6
GSMUA_Achr7P15510_001 Banana cytosol, plasma membrane 70.86 30.39
CDY09211 Canola cytosol 74.29 30.37
CDY10804 Canola cytosol 74.29 30.37
CDY34479 Canola cytosol 74.29 30.37
CDY61938 Canola cytosol 74.29 30.37
HORVU6Hr1G085370.1 Barley cytosol 77.14 29.87
Bra031605.1-P Field mustard cytosol 72.57 29.74
CDY22710 Canola cytosol 72.57 29.74
CDY22711 Canola cytosol 72.57 29.74
VIT_06s0004g03220.t01 Wine grape cytosol 85.14 28.76
CDX93604 Canola cytosol 74.29 28.26
Bra020251.1-P Field mustard cytosol 65.71 27.91
Bra030707.1-P Field mustard cytosol 85.14 25.25
GSMUA_AchrUn_... Banana cytosol 29.71 24.88
CDY58828 Canola cytosol 72.57 22.36
GSMUA_Achr10P... Banana cytosol 32.0 19.86
GSMUA_Achr10P... Banana cytosol 31.43 19.71
EES10540 Sorghum cytosol 36.57 11.9
EER90508 Sorghum mitochondrion 28.0 10.82
EES12776 Sorghum cytosol 39.43 10.18
EES13106 Sorghum cytosol 40.57 10.11
EES05366 Sorghum plastid 26.29 9.87
CDX70032 Canola cytosol 18.86 9.59
GSMUA_Achr6P04090_001 Banana cytosol 4.57 4.06
CDY06288 Canola cytosol 2.29 3.48
CDY06290 Canola cytosol 2.29 3.48
CDY67376 Canola cytosol 2.29 3.48
CDY69678 Canola cytosol 2.29 3.48
HORVU4Hr1G056830.1 Barley cytosol 4.0 2.39
Protein Annotations
Gene3D:3.40.50.300MapMan:35.1UniProt:A0A109ND32GO:GO:0000166GO:GO:0003674GO:GO:0003824
GO:GO:0003924GO:GO:0005488GO:GO:0005525GO:GO:0016787InterPro:IPR000795ProteinID:KXG18661.1
EnsemblPlants:OQU75597ProteinID:OQU75597ProteinID:OQU75597.1InterPro:P-loop_NTPasePFAM:PF00009PRINTS:PR00315
PFscan:PS51722PANTHER:PTHR23115PANTHER:PTHR23115:SF230EnsemblPlantsGene:SORBI_3K024000SUPFAM:SSF52540InterPro:TF_GTP-bd_dom
UniParc:UPI00076BBF40:::::
Description
hypothetical protein
Coordinates
chrsuper_2002:+:558..3506
Molecular Weight (calculated)
19656.1 Da
IEP (calculated)
8.922
GRAVY (calculated)
-0.017
Length
175 amino acids
Sequence
(BLAST)
001: MGKEKTHISI VVIGHVDSGK LTTTGHLIYK LGGIDKRVIE RFEKEAAEMN KRSFKYAWVL DKLKAKRERS ITIDIALWKF ETTKYYCTVI DAPVHRAFIK
101: NMISGTSQAD CAVLIIESTT GGFEAGISKD GQTCEHALLA FTLGVKQMIC CCNKANFGHY CFHIPQTFLW AICKT
Best Arabidopsis Sequence Match ( AT1G07930.1 )
(BLAST)
001: MGKEKFHINI VVIGHVDSGK STTTGHLIYK LGGIDKRVIE RFEKEAAEMN KRSFKYAWVL DKLKAERERG ITIDIALWKF ETTKYYCTVI DAPGHRDFIK
101: NMITGTSQAD CAVLIIDSTT GGFEAGISKD GQTREHALLA FTLGVKQMIC CCNKMDATTP KYSKARYDEI IKEVSSYLKK VGYNPDKIPF VPISGFEGDN
201: MIERSTNLDW YKGPTLLEAL DQINEPKRPS DKPLRLPLQD VYKIGGIGTV PVGRVETGMI KPGMVVTFAP TGLTTEVKSV EMHHESLLEA LPGDNVGFNV
301: KNVAVKDLKR GYVASNSKDD PAKGAANFTS QVIIMNHPGQ IGNGYAPVLD CHTSHIAVKF SEILTKIDRR SGKEIEKEPK FLKNGDAGMV KMTPTKPMVV
401: ETFSEYPPLG RFAVRDMRQT VAVGVIKSVD KKDPTGAKVT KAAVKKGAK
Arabidopsis Description
A1Elongation factor 1-alpha 4 [Source:UniProtKB/Swiss-Prot;Acc:Q8GTY0]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.