Factsheet for Solyc06g009960.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
vacuole 1
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc10g074680.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G07920.1	Solyc10g074680.1.1	AT3G54220.1	19228333
AT1G07930.1	Solyc10g074680.1.1	AT3G54220.1	19228333

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P24440_001	Banana	cytosol	30.24	97.64
CDY06288	Canola	cytosol	25.61	91.3
CDY06290	Canola	cytosol	25.61	91.3
CDY67376	Canola	cytosol	25.61	91.3
CDY69678	Canola	cytosol	25.61	91.3
Solyc06g005060.2.1	Tomato	cytosol	99.02	90.62
Solyc06g009970.2.1	Tomato	extracellular, nucleus, plastid	99.02	90.62
PGSC0003DMT400053547	Potato	cytosol	98.05	89.73
PGSC0003DMT400053553	Potato	cytosol	98.05	89.73
PGSC0003DMT400059830	Potato	cytosol	98.05	89.73
PGSC0003DMT400059832	Potato	cytosol	98.05	89.73
Solyc11g069700.1.1	Tomato	nucleus	97.32	89.26
Os03t0177400-01	Rice	cytosol	96.34	88.37
Os03t0177500-01	Rice	cytosol	96.34	88.37
Os03t0177900-01	Rice	plasma membrane	96.34	88.37
Os03t0178000-02	Rice	cytosol	96.34	88.37
KRG93959	Soybean	nucleus	95.85	87.92
GSMUA_Achr10P...	Banana	cytosol	59.76	87.81
KRH57863	Soybean	nucleus	95.61	87.7
KRH58241	Soybean	nucleus	95.61	87.7
Zm00001d046449_P003	Maize	cytosol	95.61	87.7
KXG20293	Sorghum	cytosol	95.37	87.47
KXG20294	Sorghum	cytosol	95.37	87.47
KXG20296	Sorghum	cytosol	95.37	87.47
KXG20299	Sorghum	cytosol	95.37	87.47
Zm00001d036904_P001	Maize	cytosol	95.37	87.47
KRH04781	Soybean	endoplasmic reticulum	95.12	87.25
KRH07098	Soybean	cytosol, mitochondrion, nucleus	95.12	87.25
CDY09211	Canola	cytosol	90.98	87.15
CDY10804	Canola	cytosol	90.98	87.15
CDY34479	Canola	cytosol	90.98	87.15
CDY61938	Canola	cytosol	90.98	87.15
Zm00001d037905_P010	Maize	cytosol	95.85	87.14
CDX88757	Canola	cytosol	85.12	87.03
HORVU4Hr1G056830.1	Barley	cytosol	62.2	87.03
Zm00001d009868_P015	Maize	cytosol	95.61	86.92
Zm00001d009870_P008	Maize	cytosol	95.61	86.92
Zm00001d037873_P010	Maize	cytosol	95.61	86.92
GSMUA_Achr10P...	Banana	cytosol	59.76	86.88
AT1G07920.1	Thale cress	cytosol	95.12	86.86
AT1G07930.1	Thale cress	cytosol	95.12	86.86
AT1G07940.3	Thale cress	cytosol	95.12	86.86
AT5G60390.2	Thale cress	cytosol	95.12	86.86
Zm00001d037875_P014	Maize	cytosol	95.37	86.7
Zm00001d037877_P014	Maize	cytosol	95.37	86.7
HORVU4Hr1G056740.1	Barley	cytosol	94.39	86.58
TraesCS4B01G196900.1	Wheat	golgi	94.39	86.58
TraesCS5B01G418100.1	Wheat	cytosol	94.39	86.58
TraesCS5B01G418200.1	Wheat	cytosol	94.39	86.58
Bra002483.1-P	Field mustard	cytosol	94.63	86.41
Bra018242.1-P	Field mustard	cytosol	94.63	86.41
Bra018669.1-P	Field mustard	cytosol	94.63	86.41
Bra031602.1-P	Field mustard	cytosol	94.63	86.41
KRH34904	Soybean	nucleus	94.39	86.38
CDY09214	Canola	cytosol	33.66	86.25
Bra020253.1-P	Field mustard	cytosol	94.39	86.19
TraesCS4A01G107600.1	Wheat	cytosol	93.9	86.13
TraesCS4A01G107700.1	Wheat	cytosol	93.9	86.13
TraesCS5A01G415400.1	Wheat	cytosol	93.9	86.13
TraesCS5A01G415600.1	Wheat	cytosol	93.9	86.13
VIT_08s0040g02330.t01	Wine grape	cytosol	93.66	85.91
Bra031601.1-P	Field mustard	cytosol	41.46	85.86
Bra006661.1-P	Field mustard	cytosol	93.66	85.52
Bra031605.1-P	Field mustard	cytosol	89.02	85.48
CDY22710	Canola	cytosol	89.02	85.48
CDY22711	Canola	cytosol	89.02	85.48
Zm00001d037882_P001	Maize	cytosol	38.54	85.41
Bra020251.1-P	Field mustard	cytosol	85.37	84.95
HORVU5Hr1G051280.1	Barley	cytosol	21.22	83.65
CDY67375	Canola	cytosol	56.59	83.45
HORVU5Hr1G100200.3	Barley	mitochondrion	94.39	83.41
HORVU5Hr1G100700.3	Barley	plasma membrane	94.39	83.23
CDY06289	Canola	cytosol	51.22	82.03
CDY06287	Canola	cytosol	45.37	81.94
CDX70032	Canola	cytosol	68.54	81.69
GSMUA_Achr7P15510_001	Banana	cytosol, plasma membrane	81.22	81.62
HORVU4Hr1G056820.1	Barley	plasma membrane	94.39	81.3
GSMUA_Achr6P04090_001	Banana	cytosol	39.02	81.22
CDX93604	Canola	cytosol	90.98	81.09
HORVU6Hr1G085320.3	Barley	cytosol	87.07	80.95
TraesCS4B01G196800.2	Wheat	golgi	94.39	80.12
GSMUA_AchrUn_...	Banana	cytosol	40.73	79.9
CDX95108	Canola	cytosol, extracellular	94.88	79.88
OQU75582	Sorghum	cytosol	24.15	79.2
HORVU6Hr1G085370.1	Barley	cytosol	86.59	78.54
Zm00001d009887_P001	Maize	cytosol	27.32	76.71
GSMUA_Achr3P17840_001	Banana	cytosol	28.29	76.32
OQU75597	Sorghum	cytosol	32.2	75.43
GSMUA_Achr10P...	Banana	cytosol, plastid	38.05	72.56
Bra030707.1-P	Field mustard	cytosol	94.88	65.93
CDY58828	Canola	cytosol	89.27	64.44
GSMUA_Achr6P02020_001	Banana	mitochondrion	48.29	57.23
TraesCS2D01G323300.1	Wheat	cytosol, mitochondrion	13.66	52.83
Solyc03g118990.1.1	Tomato	cytosol	8.29	48.57
Solyc06g069020.2.1	Tomato	cytosol, nucleus	35.12	26.97
Solyc06g008940.2.1	Tomato	unclear	29.02	26.39
Solyc06g071790.2.1	Tomato	nucleus, plastid	28.78	26.22
Solyc09g073000.2.1	Tomato	plastid	28.78	26.22
Solyc03g112150.1.1	Tomato	plastid	29.02	24.95
Solyc03g119290.2.1	Tomato	cytosol	33.66	23.47
Solyc12g036410.1.1	Tomato	cytosol	33.17	23.13

Protein Annotations

MapMan:17.5.1.1	Gene3D:2.40.30.10	Gene3D:3.40.50.300	InterPro:EFTu-like_2	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003746	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488
GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006412	GO:GO:0006414
GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016787
GO:GO:0019538	InterPro:IPR000795	UniProt:K4C424	InterPro:P-loop_NTPase	PFAM:PF00009	PFAM:PF03143
PFAM:PF03144	PRINTS:PR00315	PFscan:PS51722	PANTHER:PTHR23115	PANTHER:PTHR23115:SF230	SUPFAM:SSF50447
SUPFAM:SSF50465	SUPFAM:SSF52540	EnsemblPlantsGene:Solyc06g009960.1	EnsemblPlants:Solyc06g009960.1.1	InterPro:TF_GTP-bd_dom	InterPro:Transl_B-barrel_sf
InterPro:Transl_elong_EF1A/Init_IF2_C	InterPro:Transl_elong_EFTu/EF1A_C	UniParc:UPI00027670AA	SEG:seg	:	:

Description

No Description!

Coordinates

chr6:-:4358595..4360016

Molecular Weight (calculated)

44879.5 Da

IEP (calculated)

9.576

GRAVY (calculated)

-0.304

Length

410 amino acids

Sequence
(BLAST)

001: MGKEKIHISI VVIGHVDSGK STTTGHLIYK LGGIDKRVIE RFEKEAAERE RGITIDIALW KFETTKYYCT VIDAPGHRDF IKNMITGTSQ ADCAVLIIDS
101: TTGGFEAGIS KDGQTREHAL LAFTLGVKQM ICCYNKMDAT TPKYSKARYD EIVKEVSSYL KKVGYNPDKI PFYKGPTLLE ALDQINEPKR PSDKPLRLPL
201: QDVYKIGGIG TVPVGRVETG VIKPGMVVTF GPTGLTTEVK SVEMHHEALQ EALPGDNVGF NVKNVAVKDL KRGYVASNSE DDPAKGAASF TAQVIIMNHP
301: GQIGNGYAPV LDCHTSHIAV KFAEILTKID RRSGKELEKE PKFLKNGDAG MVKMIPTKPM VVETFAEYPP LGRFAVRDMR QTVAVGVVKN VDKKDPTGAK
401: VTKAAQKKGK

Best Arabidopsis Sequence Match ( AT1G07930.1 )
(BLAST)

001: MGKEKFHINI VVIGHVDSGK STTTGHLIYK LGGIDKRVIE RFEKEAAEMN KRSFKYAWVL DKLKAERERG ITIDIALWKF ETTKYYCTVI DAPGHRDFIK
101: NMITGTSQAD CAVLIIDSTT GGFEAGISKD GQTREHALLA FTLGVKQMIC CCNKMDATTP KYSKARYDEI IKEVSSYLKK VGYNPDKIPF VPISGFEGDN
201: MIERSTNLDW YKGPTLLEAL DQINEPKRPS DKPLRLPLQD VYKIGGIGTV PVGRVETGMI KPGMVVTFAP TGLTTEVKSV EMHHESLLEA LPGDNVGFNV
301: KNVAVKDLKR GYVASNSKDD PAKGAANFTS QVIIMNHPGQ IGNGYAPVLD CHTSHIAVKF SEILTKIDRR SGKEIEKEPK FLKNGDAGMV KMTPTKPMVV
401: ETFSEYPPLG RFAVRDMRQT VAVGVIKSVD KKDPTGAKVT KAAVKKGAK

Arabidopsis Description

A1Elongation factor 1-alpha 4 [Source:UniProtKB/Swiss-Prot;Acc:Q8GTY0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.