Factsheet for Bra020251.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
vacuole 1
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra007056.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G07920.1	Bra007056.1-P	AT3G54220.1	19228333
AT1G07930.1	Bra007056.1-P	AT3G54220.1	19228333

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY69678	Canola	cytosol	27.67	99.13
GSMUA_Achr2P19000_001	Banana	cytosol	17.96	96.1
Bra002483.1-P	Field mustard	cytosol	99.51	91.31
Bra031602.1-P	Field mustard	cytosol	99.51	91.31
Bra018669.1-P	Field mustard	cytosol	99.51	91.31
HORVU4Hr1G056830.1	Barley	cytosol	64.81	91.13
Bra020253.1-P	Field mustard	cytosol	99.27	91.09
Bra018242.1-P	Field mustard	cytosol	99.27	91.09
CDY09211	Canola	cytosol	94.42	90.89
AT1G07930.1	Thale cress	cytosol	98.79	90.65
AT1G07920.1	Thale cress	cytosol	98.79	90.65
AT5G60390.2	Thale cress	cytosol	98.79	90.65
AT1G07940.3	Thale cress	cytosol	98.79	90.65
Bra031605.1-P	Field mustard	cytosol	93.93	90.63
Bra006661.1-P	Field mustard	cytosol	98.54	90.42
CDX70032	Canola	cytosol	74.76	89.53
KRH58241	Soybean	nucleus	95.39	87.92
KRG93959	Soybean	nucleus	95.39	87.92
Os03t0177900-01	Rice	plasma membrane	94.9	87.47
Os03t0178000-02	Rice	cytosol	94.9	87.47
Os03t0177500-01	Rice	cytosol	94.9	87.47
Os03t0177400-01	Rice	cytosol	94.9	87.47
KRH07098	Soybean	cytosol, mitochondrion, nucleus	94.9	87.47
GSMUA_Achr6P04090_001	Banana	cytosol	41.75	87.31
Solyc06g005060.2.1	Tomato	cytosol	94.9	87.28
Solyc06g009970.2.1	Tomato	extracellular, nucleus, plastid	94.9	87.28
KRH34904	Soybean	nucleus	94.9	87.28
PGSC0003DMT400050663	Potato	cytosol	94.66	87.25
OQU75582	Sorghum	cytosol	26.46	87.2
Zm00001d036904_P001	Maize	cytosol	94.42	87.02
VIT_06s0004g03240.t01	Wine grape	cytosol	94.42	87.02
Solyc11g069700.1.1	Tomato	nucleus	94.42	87.02
KXG20299	Sorghum	cytosol	94.42	87.02
KXG20296	Sorghum	cytosol	94.42	87.02
KXG20294	Sorghum	cytosol	94.42	87.02
KXG20293	Sorghum	cytosol	94.42	87.02
PGSC0003DMT400059832	Potato	cytosol	94.17	86.61
PGSC0003DMT400059830	Potato	cytosol	94.17	86.61
PGSC0003DMT400053553	Potato	cytosol	94.17	86.61
PGSC0003DMT400053547	Potato	cytosol	94.17	86.61
Zm00001d046449_P003	Maize	cytosol	93.93	86.58
KRH57863	Soybean	nucleus	93.93	86.58
KRH04781	Soybean	endoplasmic reticulum	93.93	86.58
PGSC0003DMT400020968	Potato	cytosol	93.69	86.35
VIT_08s0040g02330.t01	Wine grape	cytosol	93.69	86.35
Zm00001d037905_P010	Maize	cytosol	93.93	85.81
TraesCS4A01G107600.1	Wheat	cytosol	92.96	85.68
HORVU4Hr1G056740.1	Barley	cytosol	92.96	85.68
TraesCS5B01G418200.1	Wheat	cytosol	92.96	85.68
TraesCS5B01G418100.1	Wheat	cytosol	92.96	85.68
TraesCS5A01G415600.1	Wheat	cytosol	92.96	85.68
TraesCS5A01G415400.1	Wheat	cytosol	92.96	85.68
TraesCS4B01G196900.1	Wheat	golgi	92.96	85.68
TraesCS4A01G107700.1	Wheat	cytosol	92.96	85.68
Zm00001d037873_P010	Maize	cytosol	93.69	85.59
Zm00001d009870_P008	Maize	cytosol	93.69	85.59
Zm00001d009868_P015	Maize	cytosol	93.69	85.59
Zm00001d037875_P014	Maize	cytosol	93.45	85.37
Zm00001d037877_P014	Maize	cytosol	93.45	85.37
Solyc06g009960.1.1	Tomato	cytosol	84.95	85.37
VIT_13s0019g03920.t01	Wine grape	cytosol	93.69	84.84
HORVU5Hr1G100200.3	Barley	mitochondrion	92.96	82.54
HORVU5Hr1G100700.3	Barley	plasma membrane	92.96	82.37
GSMUA_Achr10P...	Banana	cytosol	55.34	80.85
HORVU6Hr1G085320.3	Barley	cytosol	86.41	80.73
GSMUA_Achr10P...	Banana	cytosol	54.61	80.65
HORVU4Hr1G056820.1	Barley	plasma membrane	92.72	80.25
TraesCS4B01G196800.2	Wheat	golgi	92.96	79.3
Bra031601.1-P	Field mustard	cytosol	37.62	78.28
HORVU6Hr1G085370.1	Barley	cytosol	85.68	78.1
VIT_19s0014g04110.t01	Wine grape	cytosol	22.82	77.69
GSMUA_Achr7P15510_001	Banana	cytosol, plasma membrane	76.21	76.96
Zm00001d037882_P001	Maize	cytosol	33.74	75.14
VIT_06s0004g03220.t01	Wine grape	cytosol	94.42	75.1
Zm00001d009887_P001	Maize	cytosol	25.49	71.92
GSMUA_AchrUn_...	Banana	cytosol	35.19	69.38
GSMUA_Achr5P24440_001	Banana	cytosol	21.36	69.29
Bra030707.1-P	Field mustard	cytosol	99.03	69.15
TraesCS2D01G323300.1	Wheat	cytosol, mitochondrion	17.23	66.98
OQU75597	Sorghum	cytosol	27.91	65.71
GSMUA_Achr3P17840_001	Banana	cytosol	23.79	64.47
GSMUA_Achr10P...	Banana	cytosol, plastid	33.01	63.26
HORVU5Hr1G051280.1	Barley	cytosol	15.53	61.54
GSMUA_Achr6P02020_001	Banana	mitochondrion	49.51	58.96
Bra013458.1-P	Field mustard	plastid	28.16	24.68
Bra038805.1-P	Field mustard	plastid	28.4	24.63
Bra036234.1-P	Field mustard	mitochondrion	26.94	24.45
Bra033753.1-P	Field mustard	plastid	27.91	24.26
Bra000853.1-P	Field mustard	mitochondrion	26.46	24.06
Bra020926.1-P	Field mustard	plastid	24.03	23.18
Bra006069.1-P	Field mustard	cytosol	33.5	21.9
Bra016571.1-P	Field mustard	cytosol	33.98	19.75
Bra028577.1-P	Field mustard	cytosol	33.25	18.77

Protein Annotations

MapMan:17.5.1.1	Gene3D:2.40.30.10	Gene3D:3.40.50.300	EnsemblPlantsGene:Bra020251	EnsemblPlants:Bra020251.1	EnsemblPlants:Bra020251.1-P
InterPro:EFTu-like_2	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488
GO:GO:0005525	GO:GO:0016787	InterPro:G_TR_CS	InterPro:IPR000795	UniProt:M4DUQ8	InterPro:P-loop_NTPase
PFAM:PF00009	PFAM:PF03143	PFAM:PF03144	PRINTS:PR00315	ScanProsite:PS00301	PFscan:PS51722
PANTHER:PTHR23115	PANTHER:PTHR23115:SF230	SUPFAM:SSF50447	SUPFAM:SSF50465	SUPFAM:SSF52540	InterPro:TF_GTP-bd_dom
InterPro:Transl_B-barrel_sf	InterPro:Transl_elong_EF1A/Init_IF2_C	InterPro:Transl_elong_EFTu/EF1A_C	UniParc:UPI0002543586	SEG:seg	:

Description

AT5G60390 (E=8e-160) | elongation factor 1-alpha / EF-1-alpha

Coordinates

chrA02:-:5871663..5873102

Molecular Weight (calculated)

45614.4 Da

IEP (calculated)

9.840

GRAVY (calculated)

-0.350

Length

412 amino acids

Sequence
(BLAST)

001: MGKEKFHINI VVIGHVDSGK STTTGHLIYK LGGIDKRVIE RFEKEAAEMN KRSFKYAWVL DKLKAERERG ITIDIALWKF ETTKYYCTVI DAPGHRDFIK
101: NMITGTSQAD CAVLIIEMDA TTPKYSKARY DEIIKEVSSY LKKVGYNPDK IPFVPISGFE GDNMIERSTN LDWYKGPTLL EALDQINEPK RPSDKPLRLP
201: LQDVYKIGGI GTVPVGRVET GMLKPGMVVT FAPSGLTTEV KSVEMHHESL VEALPGDNVG FNVKNVAVKD LKRGYVASNS KDDPAKGAAN FTSQVIIMNH
301: PGQIGNGYAP VLDCHTSHIA VKFSEILTKI DRRSGKEIEK EPKFLKNGDA GMVKMTPTKP MVVETFSEYP PLGRFAVRDM RQTVAVGVIK SVDKKHPTGA
401: KVTKAAVKKG AK

Best Arabidopsis Sequence Match ( AT1G07930.1 )
(BLAST)

001: MGKEKFHINI VVIGHVDSGK STTTGHLIYK LGGIDKRVIE RFEKEAAEMN KRSFKYAWVL DKLKAERERG ITIDIALWKF ETTKYYCTVI DAPGHRDFIK
101: NMITGTSQAD CAVLIIDSTT GGFEAGISKD GQTREHALLA FTLGVKQMIC CCNKMDATTP KYSKARYDEI IKEVSSYLKK VGYNPDKIPF VPISGFEGDN
201: MIERSTNLDW YKGPTLLEAL DQINEPKRPS DKPLRLPLQD VYKIGGIGTV PVGRVETGMI KPGMVVTFAP TGLTTEVKSV EMHHESLLEA LPGDNVGFNV
301: KNVAVKDLKR GYVASNSKDD PAKGAANFTS QVIIMNHPGQ IGNGYAPVLD CHTSHIAVKF SEILTKIDRR SGKEIEKEPK FLKNGDAGMV KMTPTKPMVV
401: ETFSEYPPLG RFAVRDMRQT VAVGVIKSVD KKDPTGAKVT KAAVKKGAK

Arabidopsis Description

A1Elongation factor 1-alpha 4 [Source:UniProtKB/Swiss-Prot;Acc:Q8GTY0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.