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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion, plastid

Predictor Summary:
  • plastid 3
  • mitochondrion 4
  • nucleus 1
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 1
  • golgi 1
Predictors GFP MS/MS Papers
Winner Takes All:mitochondrion, plastid
Any Predictor:mitochondrion, nucleus, plastid, secretory
BaCelLo:plastid
iPSORT:mitochondrion
MultiLoc:mitochondrion
Plant-mPloc:nucleus
Predotar:secretory
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:plastid
YLoc:plastid
PPI

Inferred distinct locusB in Crop

locusBlocations
Bra000393.1-P
Bra001446.1-P
Bra002483.1-P
Bra002804.1-P
Bra003891.1-P
Bra004928.1-P
Bra005741.1-P
Bra006661.1-P
Bra006865.1-P
Bra007056.1-P
Bra008013.1-P
Bra008222.1-P
Bra009549.1-P
Bra010606.1-P
Bra011099.1-P
Bra011777.1-P
Bra012430.1-P
Bra014545.1-P
Bra015271.1-P
Bra017445.1-P
Bra017842.1-P
Bra018242.1-P
Bra018669.1-P
Bra020251.1-P
Bra020253.1-P
Bra022374.1-P
Bra024877.1-P
Bra026650.1-P
Bra027050.1-P
Bra029227.1-P
Bra029424.1-P
Bra030707.1-P
Bra031097.1-P
Bra031601.1-P
Bra031602.1-P
Bra031605.1-P
Bra032541.1-P
Bra034764.1-P
Bra035048.1-P
Bra036707.1-P
Bra038550.1-P
Bra038707.1-P
Bra039018.1-P
Bra039324.1-P
Bra039816.1-P

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G54220.1 Bra015271.1-P AT1G03840.1 17785527
AT3G54220.1 Bra032541.1-P AT1G03840.1 17785527
AT3G54220.1 Bra002483.1-P AT1G07920.1 19228333
AT3G54220.1 Bra006661.1-P AT1G07920.1 19228333
AT3G54220.1 Bra018242.1-P AT1G07920.1 19228333
AT3G54220.1 Bra018669.1-P AT1G07920.1 19228333
AT3G54220.1 Bra020251.1-P AT1G07920.1 19228333
AT3G54220.1 Bra020253.1-P AT1G07920.1 19228333
AT3G54220.1 Bra030707.1-P AT1G07920.1 19228333
AT3G54220.1 Bra031601.1-P AT1G07920.1 19228333
AT3G54220.1 Bra031602.1-P AT1G07920.1 19228333
AT3G54220.1 Bra031605.1-P AT1G07920.1 19228333
AT3G54220.1 Bra002483.1-P AT1G07930.1 19228333
AT3G54220.1 Bra006661.1-P AT1G07930.1 19228333
AT3G54220.1 Bra018242.1-P AT1G07930.1 19228333
AT3G54220.1 Bra018669.1-P AT1G07930.1 19228333
AT3G54220.1 Bra020251.1-P AT1G07930.1 19228333
AT3G54220.1 Bra020253.1-P AT1G07930.1 19228333
AT3G54220.1 Bra030707.1-P AT1G07930.1 19228333
AT3G54220.1 Bra031601.1-P AT1G07930.1 19228333
AT3G54220.1 Bra031602.1-P AT1G07930.1 19228333
AT3G54220.1 Bra031605.1-P AT1G07930.1 19228333
AT3G54220.1 Bra012430.1-P AT1G27050.1 19228333
AT3G54220.1 Bra027050.1-P AT1G62360.1 17785527
AT3G54220.1 Bra003891.1-P AT1G72160.1 19228333
AT3G54220.1 Bra008013.1-P AT1G72160.1 19228333
AT3G54220.1 Bra008222.1-P AT1G75750.1 19228333
AT3G54220.1 Bra029227.1-P AT1G75750.1 19228333
AT3G54220.1 Bra038550.1-P AT1G75750.1 19228333
AT3G54220.1 Bra035048.1-P AT1G78570.1 19228333
AT3G54220.1 Bra017445.1-P AT2G01540.1 19228333
AT3G54220.1 Bra024877.1-P AT2G01540.1 19228333
AT3G54220.1 Bra026650.1-P AT2G01540.1 19228333
AT3G54220.1 Bra031097.1-P AT2G19760.1 21798944
AT3G54220.1 Bra036707.1-P AT2G19760.1 21798944
AT3G54220.1 Bra039018.1-P AT2G19760.1 21798944
AT3G54220.1 Bra000393.1-P AT2G45660.1 19228333
AT3G54220.1 Bra004928.1-P AT2G45660.1 19228333
AT3G54220.1 Bra039324.1-P AT2G45660.1 19228333
AT3G54220.1 Bra001446.1-P AT3G12280.1 22921914
AT3G54220.1 Bra034764.1-P AT3G12280.1 22921914
AT3G54220.1 Bra038707.1-P AT3G12280.1 22921914
AT3G54220.1 Bra022374.1-P AT3G18960.1 19228333
AT3G54220.1 Bra039816.1-P AT3G32980.1 19228333
AT3G54220.1 Bra007056.1-P AT3G54220.1 17785527
AT3G54220.1 Bra029424.1-P AT4G11880.1 19228333
AT3G54220.1 Bra011099.1-P AT4G29350.1 21798944
AT3G54220.1 Bra010606.1-P AT4G37650.1 17446396
AT3G54220.1 Bra011777.1-P AT4G37650.1 17446396
AT3G54220.1 Bra017842.1-P AT4G37650.1 17446396
AT3G54220.1 Bra010606.1-P AT4G37650.1 17785527
AT3G54220.1 Bra011777.1-P AT4G37650.1 17785527
AT3G54220.1 Bra017842.1-P AT4G37650.1 17785527
AT3G54220.1 Bra010606.1-P AT4G37650.1 18500650
AT3G54220.1 Bra011777.1-P AT4G37650.1 18500650
AT3G54220.1 Bra017842.1-P AT4G37650.1 18500650
AT3G54220.1 Bra010606.1-P AT4G37650.1 22921914
AT3G54220.1 Bra011777.1-P AT4G37650.1 22921914
AT3G54220.1 Bra017842.1-P AT4G37650.1 22921914
AT3G54220.1 Bra005741.1-P AT5G03150.1 17785527
AT3G54220.1 Bra009549.1-P AT5G03150.1 17785527
AT3G54220.1 Bra002804.1-P AT5G56600.1 21798944
AT3G54220.1 Bra006865.1-P AT5G56600.1 21798944
AT3G54220.1 Bra014545.1-P AT5G56600.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra025456.1-P Field mustard mitochondrion 47.15 60.57
CDX78219 Canola nucleus, plastid 100.0 52.4
CDX73496 Canola nucleus, plastid 100.0 50.8
KXG22896 Sorghum cytosol, plasma membrane 80.06 48.01
AT3G54220.1 Thale cress nucleus, plastid 98.73 47.78
GSMUA_Achr11P... Banana plastid 75.63 41.64
HORVU5Hr1G045920.2 Barley cytosol 76.58 41.37
TraesCS4A01G191300.1 Wheat cytosol 78.16 40.03
Os11t0124300-01 Rice nucleus, plastid 79.43 38.56
TraesCS5B01G143100.1 Wheat plastid 77.53 38.4
Os12t0122000-01 Rice plastid 79.75 38.18
TraesCS5A01G144000.1 Wheat plastid 77.53 37.81
Zm00001d052380_P001 Maize plastid 79.75 37.72
TraesCS5D01G148000.1 Wheat plastid 77.53 37.52
GSMUA_Achr8P09400_001 Banana cytosol 79.75 37.5
TraesCS4D01G122000.1 Wheat plastid 78.16 36.38
TraesCS4B01G124000.1 Wheat plastid 78.16 36.38
OQU82754 Sorghum plastid 79.75 35.44
Zm00001d005029_P001 Maize plastid 75.95 35.4
VIT_08s0056g00050.t01 Wine grape nucleus 87.34 35.29
GSMUA_Achr5P21440_001 Banana nucleus, plastid 75.0 33.52
Solyc10g074680.1.1 Tomato cytosol 85.44 32.69
PGSC0003DMT400043358 Potato cytosol 84.81 32.45
KRH40615 Soybean nucleus, plastid 84.49 32.44
Bra012102.1-P Field mustard cytosol 17.09 32.14
KRH00551 Soybean nucleus, plastid 84.81 31.83
Bra038002.1-P Field mustard nucleus, plastid 36.39 25.96
Bra039762.1-P Field mustard cytosol 36.39 23.57
Bra014251.1-P Field mustard cytosol 32.91 23.37
Bra018848.1-P Field mustard cytosol 31.96 22.95
Bra013973.1-P Field mustard cytosol 37.34 22.48
Bra024875.1-P Field mustard nucleus 37.34 20.59
Bra031991.1-P Field mustard cytosol, nucleus, plastid 32.28 20.2
Bra017443.1-P Field mustard cytosol 33.23 19.2
Bra026999.1-P Field mustard nucleus, plastid 34.49 18.08
Bra027620.1-P Field mustard plastid 35.76 17.88
Protein Annotations
MapMan:15.5.12MapMan:26.3.1.5EnsemblPlantsGene:Bra007056EnsemblPlants:Bra007056.1EnsemblPlants:Bra007056.1-PGO:GO:0003674
GO:GO:0003676GO:GO:0003677GO:GO:0003700GO:GO:0005488GO:GO:0005575GO:GO:0005622
GO:GO:0005623GO:GO:0005634GO:GO:0006139GO:GO:0006351GO:GO:0006355GO:GO:0007275
GO:GO:0008150GO:GO:0008152GO:GO:0008356GO:GO:0009058GO:GO:0009605GO:GO:0009606
GO:GO:0009628GO:GO:0009630GO:GO:0009956GO:GO:0009987GO:GO:0030154GO:GO:0043565
GO:GO:0048366GO:GO:0051457GO:GO:0090610InterPro:IPR005202UniProt:M4CS64PFAM:PF03514
PFscan:PS50985PANTHER:PTHR31636PANTHER:PTHR31636:SF12InterPro:TF_GRASUniParc:UPI00025428A9:
Description
AT3G54220 (E=2e-180) SCR, SGR1 | SCR (SCARECROW); protein binding / protein homodimerization/ sequence-specific DNA binding / transcription factor
Coordinates
chrA09:+:27068178..27069291
Molecular Weight (calculated)
34831.8 Da
IEP (calculated)
6.582
GRAVY (calculated)
-0.054
Length
316 amino acids
Sequence
(BLAST)
001: MSARLLNSCL GIYAALPSRW MPQTHSLKMV SAFQVFNGIS PLVKFSHFTA NQAIQEAFEK EDCVHIIDLD IMQGLQWPGL FHILASRPGG PPHVRLTGLG
101: TSMEALQATG KRLSDFADKL GLPFEFCPLA EKVGNLDAER LNVRKREAVA VHWLQHSLYD VTGSDTHTLW LLQRLAPKVV TVVEQDLSHA GSFLGRFVEA
201: IHYYSALFDS LGASYGEESE ERHVVEQQLL SKEIRNVLAV GGPSRSGEVK FESWREKMQQ CGFKGISLAG NAATQATLLL GMFPSDGYTL VDDNGTLKLG
301: WKDLSLLTAS AWTPCS
Best Arabidopsis Sequence Match ( AT3G54220.1 )
(BLAST)
001: MAESGDFNGG QPPPHSPLRT TSSGSSSSNN RGPPPPPPPP LVMVRKRLAS EMSSNPDYNN SSRPPRRVSH LLDSNYNTVT PQQPPSLTAA ATVSSQPNPP
101: LSVCGFSGLP VFPSDRGGRN VMMSVQPMDQ DSSSSSASPT VWVDAIIRDL IHSSTSVSIP QLIQNVRDII FPCNPNLGAL LEYRLRSLML LDPSSSSDPS
201: PQTFEPLYQI SNNPSPPQQQ QQHQQQQQQH KPPPPPIQQQ ERENSSTDAP PQPETVTATV PAVQTNTAEA LRERKEEIKR QKQDEEGLHL LTLLLQCAEA
301: VSADNLEEAN KLLLEISQLS TPYGTSAQRV AAYFSEAMSA RLLNSCLGIY AALPSRWMPQ THSLKMVSAF QVFNGISPLV KFSHFTANQA IQEAFEKEDS
401: VHIIDLDIMQ GLQWPGLFHI LASRPGGPPH VRLTGLGTSM EALQATGKRL SDFADKLGLP FEFCPLAEKV GNLDTERLNV RKREAVAVHW LQHSLYDVTG
501: SDAHTLWLLQ RLAPKVVTVV EQDLSHAGSF LGRFVEAIHY YSALFDSLGA SYGEESEERH VVEQQLLSKE IRNVLAVGGP SRSGEVKFES WREKMQQCGF
601: KGISLAGNAA TQATLLLGMF PSDGYTLVDD NGTLKLGWKD LSLLTASAWT PRS
Arabidopsis Description
SCRProtein SCARECROW [Source:UniProtKB/Swiss-Prot;Acc:Q9M384]
SUBAcon: [plastid,nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.