Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 7
- endoplasmic reticulum 6
- vacuole 6
- plasma membrane 5
- golgi 6
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra000267.1-P | |
| Bra004709.1-P | |
| Bra007056.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G75750.1 | Bra000267.1-P | AT2G42580.1 | 19000166 |
| AT1G75750.1 | Bra004709.1-P | AT2G42580.1 | 19000166 |
| AT1G75750.1 | Bra007056.1-P | AT3G54220.1 | 19228333 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY39057 | Canola | extracellular | 100.0 | 100.0 |
| CDY44046 | Canola | extracellular | 100.0 | 100.0 |
| CDY13540 | Canola | extracellular | 96.94 | 96.94 |
| Bra038550.1-P | Field mustard | extracellular | 92.86 | 90.1 |
| AT1G75750.1 | Thale cress | extracellular | 87.76 | 87.76 |
| Bra029227.1-P | Field mustard | extracellular | 85.71 | 84.85 |
| AT2G18420.1 | Thale cress | extracellular | 65.31 | 68.09 |
| VIT_18s0001g14270.t01 | Wine grape | extracellular | 66.33 | 66.33 |
| KRH05956 | Soybean | extracellular | 65.31 | 64.65 |
| KRH17433 | Soybean | extracellular | 65.31 | 64.65 |
| Solyc01g111080.2.1 | Tomato | nucleus | 67.35 | 63.46 |
| PGSC0003DMT400004046 | Potato | extracellular | 66.33 | 62.5 |
| KRH51705 | Soybean | extracellular | 62.24 | 61.0 |
| KRH61042 | Soybean | extracellular | 60.2 | 59.0 |
| TraesCS1A01G270100.1 | Wheat | extracellular | 54.08 | 57.61 |
| HORVU1Hr1G074530.1 | Barley | extracellular | 52.04 | 55.43 |
| TraesCS1D01G270100.1 | Wheat | extracellular | 50.0 | 53.26 |
| TraesCS1D01G270300.1 | Wheat | extracellular | 48.98 | 52.17 |
| EES13089 | Sorghum | extracellular | 58.16 | 51.35 |
| Zm00001d010193_P001 | Maize | extracellular | 48.98 | 51.06 |
| KXG21918 | Sorghum | extracellular | 50.0 | 51.04 |
| Os05t0432200-00 | Rice | extracellular | 45.92 | 48.91 |
| EES18282 | Sorghum | extracellular | 46.94 | 48.42 |
| HORVU1Hr1G074580.1 | Barley | extracellular | 47.96 | 40.17 |
| Bra024530.1-P | Field mustard | extracellular | 48.98 | 40.0 |
| Bra006273.1-P | Field mustard | endoplasmic reticulum, extracellular, plasma membrane, plastid | 42.86 | 16.41 |
Protein Annotations
Description
AT1G75750 (E=4e-040) GASA1 | GASA1 (GAST1 PROTEIN HOMOLOG 1)
Coordinates
chrA02:-:13905515..13905979
Molecular Weight (calculated)
10578.9 Da
IEP (calculated)
8.685
GRAVY (calculated)
-0.028
Length
98 amino acids
Sequence
(BLAST)
(BLAST)
1: MAISKAFIAS LLISLLVLQL VEADVEISNK KNGYGSKIDC GSACIARCRL SSRPNLCHRA CGTCCARCNC VPPGTYGNYD KCKCYASLTT HDGRRKCP
1: MAISKALIAS LLISLLVLQL VQADVENSQK KNGYAKKIDC GSACVARCRL SRRPRLCHRA CGTCCYRCNC VPPGTYGNYD KCQCYASLTT HGGRRKCP
Arabidopsis Description
GASA1GASA1 [Source:UniProtKB/TrEMBL;Acc:A0A178W4S5]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.