CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 7
endoplasmic reticulum 6
vacuole 6
plasma membrane 5
golgi 6

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
BaCelLo:	secretory
EpiLoc:	vacuole
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	golgi
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX73496
CDX78219
CDY42827
CDY51514
CDY55390
CDY61202

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G75750.1	CDY42827	AT2G42580.1	19000166
AT1G75750.1	CDY51514	AT2G42580.1	19000166
AT1G75750.1	CDY55390	AT2G42580.1	19000166
AT1G75750.1	CDY61202	AT2G42580.1	19000166
AT1G75750.1	CDX73496	AT3G54220.1	19228333
AT1G75750.1	CDX78219	AT3G54220.1	19228333

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra008222.1-P	Field mustard	extracellular	100.0	100.0
CDY39057	Canola	extracellular	100.0	100.0
CDY13540	Canola	extracellular	96.94	96.94
CDY68406	Canola	extracellular	90.82	90.82
CDY30303	Canola	extracellular	92.86	90.1
CDY47499	Canola	extracellular	89.8	89.8
CDX73193	Canola	extracellular	88.78	88.78
CDX85912	Canola	extracellular	88.78	88.78
CDY65245	Canola	extracellular	88.78	87.88
AT1G75750.1	Thale cress	extracellular	87.76	87.76
AT2G18420.1	Thale cress	extracellular	65.31	68.09
VIT_18s0001g14270.t01	Wine grape	extracellular	66.33	66.33
KRH05956	Soybean	extracellular	65.31	64.65
KRH17433	Soybean	extracellular	65.31	64.65
Solyc01g111080.2.1	Tomato	nucleus	67.35	63.46
PGSC0003DMT400004046	Potato	extracellular	66.33	62.5
KRH51705	Soybean	extracellular	62.24	61.0
KRH61042	Soybean	extracellular	60.2	59.0
TraesCS1A01G270100.1	Wheat	extracellular	54.08	57.61
HORVU1Hr1G074530.1	Barley	extracellular	52.04	55.43
TraesCS1D01G270100.1	Wheat	extracellular	50.0	53.26
TraesCS1D01G270300.1	Wheat	extracellular	48.98	52.17
EES13089	Sorghum	extracellular	58.16	51.35
Zm00001d010193_P001	Maize	extracellular	48.98	51.06
KXG21918	Sorghum	extracellular	50.0	51.04
CDX90726	Canola	extracellular	50.0	49.49
Os05t0432200-00	Rice	extracellular	45.92	48.91
CDY05065	Canola	extracellular	50.0	48.51
EES18282	Sorghum	extracellular	46.94	48.42
HORVU1Hr1G074580.1	Barley	extracellular	47.96	40.17
CDY21382	Canola	extracellular	48.98	40.0
CDY43288	Canola	extracellular	47.96	39.17
CDY04794	Canola	extracellular	47.96	39.17
CDY72537	Canola	plastid	39.8	34.51
CDY31392	Canola	extracellular	44.9	17.6
CDY09898	Canola	extracellular	44.9	17.6

Protein Annotations

EnsemblPlants:CDY44046	EnsemblPlantsGene:GSBRNA2T00079458001	InterPro:GASA	PANTHER:PTHR23201	PANTHER:PTHR23201:SF2	PFAM:PF02704
ProteinID:CDY39057.1	ProteinID:CDY44046	ProteinID:CDY44046.1	SEG:seg	SignalP:SignalP-noTM	UniParc:UPI0002545D38
UniProt:A0A078I2P3	MapMan:11.10.2.1.1	:	:	:	:

Description

BnaA08g15600DBnaA02g17460D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I2P3]

Coordinates

chrLK032577:+:151021..151485

Molecular Weight (calculated)

10578.9 Da

IEP (calculated)

8.685

GRAVY (calculated)

-0.028

Length

98 amino acids

Sequence
(BLAST)

1: MAISKAFIAS LLISLLVLQL VEADVEISNK KNGYGSKIDC GSACIARCRL SSRPNLCHRA CGTCCARCNC VPPGTYGNYD KCKCYASLTT HDGRRKCP

Best Arabidopsis Sequence Match ( AT1G75750.1 )
(BLAST)

1: MAISKALIAS LLISLLVLQL VQADVENSQK KNGYAKKIDC GSACVARCRL SRRPRLCHRA CGTCCYRCNC VPPGTYGNYD KCQCYASLTT HGGRRKCP

Arabidopsis Description

GASA1GASA1 [Source:UniProtKB/TrEMBL;Acc:A0A178W4S5]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.