CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 8
endoplasmic reticulum 5
vacuole 5
plasma membrane 5
golgi 5
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	plastid, secretory
BaCelLo:	secretory
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY03088
CDY17621

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G14920.1	CDY03088	AT2G01950.1	19000166
AT5G14920.1	CDY17621	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY09898	Canola	extracellular	98.4	98.4
CDY72537	Canola	plastid	26.8	59.29
AT5G14920.1	Thale cress	extracellular	57.2	52.0
CDX73193	Canola	extracellular	18.4	46.94
CDY47499	Canola	extracellular	18.4	46.94
CDY30303	Canola	extracellular	18.8	46.53
CDY68406	Canola	extracellular	18.0	45.92
CDY13540	Canola	extracellular	18.0	45.92
GSMUA_Achr7P19950_001	Banana	extracellular	21.2	45.69
CDY65245	Canola	extracellular	18.0	45.45
CDX85912	Canola	extracellular	17.6	44.9
CDY39057	Canola	extracellular	17.6	44.9
CDY44046	Canola	extracellular	17.6	44.9
Bra006273.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane, plastid	44.0	42.97
TraesCS2B01G346900.1	Wheat	extracellular	18.0	42.06
TraesCS2D01G327800.1	Wheat	extracellular	17.2	40.19
Os04t0465300-01	Rice	extracellular	16.8	40.0
KRG93396	Soybean	extracellular	31.6	39.9
CDX90726	Canola	extracellular	15.6	39.39
TraesCS2A01G319900.1	Wheat	extracellular	16.8	39.25
TraesCS2A01G333600.1	Wheat	extracellular	16.8	39.25
CDY05065	Canola	extracellular	15.6	38.61
OQU81731	Sorghum	extracellular	17.2	38.39
KRH18589	Soybean	extracellular	26.4	36.26
Zm00001d003380_P001	Maize	extracellular	15.6	33.91
CDY43288	Canola	extracellular	16.0	33.33
CDY04794	Canola	extracellular	16.0	33.33
CDY21382	Canola	extracellular	15.6	32.5
VIT_14s0066g01790.t01	Wine grape	cytosol	35.6	29.87

Protein Annotations

EnsemblPlants:CDY31392	EnsemblPlantsGene:GSBRNA2T00047600001	InterPro:GASA	PANTHER:PTHR23201	PANTHER:PTHR23201:SF18	PFAM:PF02704
PRINTS:PR01217	ProteinID:CDY31392	ProteinID:CDY31392.1	SEG:seg	SignalP:SignalP-noTM	UniParc:UPI0004EE4006
UniProt:A0A078H1L1	MapMan:11.10.2.1.1	:	:	:	:

Description

BnaA07g03270DBnaA07g03270D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H1L1]

Coordinates

chrLK032271:+:231841..233037

Molecular Weight (calculated)

26602.0 Da

IEP (calculated)

10.684

GRAVY (calculated)

-0.481

Length

250 amino acids

Sequence
(BLAST)

001: MALSLLSVFI FLQVFRNIVF AASNEESKIS VPPSPSYKPS PPLVKPPTLP TTPIKPPTTT PPVKSPATPV TPTKPPVKSY PPQVKPPTSP LVKPPTYKPP
101: TPTVKPPTKP PVQPPTYKPP TPLVKPPTIP PVKPPTAPVK PTPTTPVTTP PPVKPPVNPI PSPPVNAPPV KPPTPPAKPP TPPPVRTRLD CVSLCGTRCG
201: QHSRQNVCMR ACVTCCYRCK CVPPGTYGNK EKCGSCYANM KTRGGRPKCP

Best Arabidopsis Sequence Match ( AT5G14920.1 )
(BLAST)

001: MALSLLSVFI FFHVFTNVVF AASNEESNAL VSLPTPTLPS PSPATKPPSP ALKPPTPSYK PPTLPTTPIK PPTTKPPVKP PTIPVTPVKP PVSTPPIKLP
101: PVQPPTYKPP TPTVKPPSVQ PPTYKPPTPT VKPPTTSPVK PPTTPPVQSP PVQPPTYKPP TSPVKPPTTT PPVKPPTTTP PVQPPTYNPP TTPVKPPTAP
201: PVKPPTPPPV RTRIDCVPLC GTRCGQHSRK NVCMRACVTC CYRCKCVPPG TYGNKEKCGS CYANMKTRGG KSKCP

Arabidopsis Description

GASA14Gibberellin-regulated protein 14 [Source:UniProtKB/Swiss-Prot;Acc:Q9LFR3]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.