Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 7
- endoplasmic reticulum 4
- vacuole 4
- plasma membrane 4
- golgi 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS3A01G099400.1 | |
| TraesCS3B01G115800.1 | |
| TraesCS3D01G099700.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G14920.1 | TraesCS3A01G099400.1 | AT2G01950.1 | 19000166 |
| AT5G14920.1 | TraesCS3B01G115800.1 | AT2G01950.1 | 19000166 |
| AT5G14920.1 | TraesCS3D01G099700.1 | AT2G01950.1 | 19000166 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G327800.1 | Wheat | extracellular | 97.2 | 97.2 |
| TraesCS2A01G319900.1 | Wheat | extracellular | 96.26 | 96.26 |
| TraesCS2B01G346900.1 | Wheat | extracellular | 96.26 | 96.26 |
| Os04t0465300-01 | Rice | extracellular | 71.03 | 72.38 |
| OQU81731 | Sorghum | extracellular | 64.49 | 61.61 |
| Zm00001d003380_P001 | Maize | extracellular | 60.75 | 56.52 |
| GSMUA_Achr7P19950_001 | Banana | extracellular | 49.53 | 45.69 |
| TraesCS1A01G270100.1 | Wheat | extracellular | 38.32 | 44.57 |
| CDY72537 | Canola | plastid | 31.78 | 30.09 |
| KRH18589 | Soybean | extracellular | 43.93 | 25.82 |
| KRG93396 | Soybean | extracellular | 44.86 | 24.24 |
| VIT_14s0066g01790.t01 | Wine grape | cytosol | 47.66 | 17.11 |
| CDY09898 | Canola | extracellular | 39.25 | 16.8 |
| CDY31392 | Canola | extracellular | 39.25 | 16.8 |
| Bra006273.1-P | Field mustard | endoplasmic reticulum, extracellular, plasma membrane, plastid | 36.45 | 15.23 |
| AT5G14920.1 | Thale cress | extracellular | 36.45 | 14.18 |
Protein Annotations
| EnsemblPlants:TraesCS2A01G333600.1 | EnsemblPlantsGene:TraesCS2A01G333600 | InterPro:GASA | PANTHER:PTHR23201 | PANTHER:PTHR23201:SF18 | PFAM:PF02704 |
| SEG:seg | SignalP:SignalP-noTM | MapMan:11.10.2.1.1 | : | : | : |
Description
No Description!
Coordinates
chr2A:-:566986482..566986979
Molecular Weight (calculated)
11030.5 Da
IEP (calculated)
8.567
GRAVY (calculated)
0.073
Length
107 amino acids
Sequence
(BLAST)
(BLAST)
001: MALGKLAVAA LVASLLLLST IKAADSPAPA AAPLGPPPHN IVDPSKDCGW ACNLRCSANS RPKLCSRACL KCCSVCRCVP AGTAGNKETC GKCYTDWTMH
101: GNNTKCP
101: GNNTKCP
001: MALSLLSVFI FFHVFTNVVF AASNEESNAL VSLPTPTLPS PSPATKPPSP ALKPPTPSYK PPTLPTTPIK PPTTKPPVKP PTIPVTPVKP PVSTPPIKLP
101: PVQPPTYKPP TPTVKPPSVQ PPTYKPPTPT VKPPTTSPVK PPTTPPVQSP PVQPPTYKPP TSPVKPPTTT PPVKPPTTTP PVQPPTYNPP TTPVKPPTAP
201: PVKPPTPPPV RTRIDCVPLC GTRCGQHSRK NVCMRACVTC CYRCKCVPPG TYGNKEKCGS CYANMKTRGG KSKCP
101: PVQPPTYKPP TPTVKPPSVQ PPTYKPPTPT VKPPTTSPVK PPTTPPVQSP PVQPPTYKPP TSPVKPPTTT PPVKPPTTTP PVQPPTYNPP TTPVKPPTAP
201: PVKPPTPPPV RTRIDCVPLC GTRCGQHSRK NVCMRACVTC CYRCKCVPPG TYGNKEKCGS CYANMKTRGG KSKCP
Arabidopsis Description
GASA14Gibberellin-regulated protein 14 [Source:UniProtKB/Swiss-Prot;Acc:Q9LFR3]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.