CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

extracellular 2
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 4
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	secretory
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY03088
CDY17621

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G14920.1	CDY03088	AT2G01950.1	19000166
AT5G14920.1	CDY17621	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX85912	Canola	extracellular	36.28	41.84
CDY47499	Canola	extracellular	36.28	41.84
CDY30303	Canola	extracellular	37.17	41.58
CDY65245	Canola	extracellular	36.28	41.41
CDX73193	Canola	extracellular	35.4	40.82
CDY68406	Canola	extracellular	35.4	40.82
CDY39057	Canola	extracellular	34.51	39.8
CDY44046	Canola	extracellular	34.51	39.8
CDY13540	Canola	extracellular	33.63	38.78
GSMUA_Achr7P19950_001	Banana	extracellular	38.94	37.93
CDX90726	Canola	extracellular	31.86	36.36
OQU81731	Sorghum	extracellular	35.4	35.71
CDY05065	Canola	extracellular	31.86	35.64
Zm00001d003380_P001	Maize	extracellular	34.51	33.91
TraesCS2B01G346900.1	Wheat	extracellular	31.86	33.64
TraesCS2D01G327800.1	Wheat	extracellular	30.97	32.71
TraesCS2A01G319900.1	Wheat	extracellular	30.09	31.78
TraesCS2A01G333600.1	Wheat	extracellular	30.09	31.78
Os04t0465300-01	Rice	extracellular	28.32	30.48
CDY43288	Canola	extracellular	30.97	29.17
CDY21382	Canola	extracellular	30.97	29.17
CDY04794	Canola	extracellular	30.97	29.17
KRH18589	Soybean	extracellular	46.02	28.57
CDY31392	Canola	extracellular	59.29	26.8
KRG93396	Soybean	extracellular	46.02	26.26
CDY09898	Canola	extracellular	57.52	26.0
Bra006273.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane, plastid	56.64	25.0
AT5G14920.1	Thale cress	extracellular	58.41	24.0
VIT_14s0066g01790.t01	Wine grape	cytosol	43.36	16.44

Protein Annotations

EnsemblPlants:CDY72537	EnsemblPlantsGene:GSBRNA2T00030432001	InterPro:GASA	PANTHER:PTHR23201	PANTHER:PTHR23201:SF18	PFAM:PF02704
PRINTS:PR01217	ProteinID:CDY72537	ProteinID:CDY72537.1	SEG:seg	UniParc:UPI0004EF23C3	UniProt:A0A078K3Q4
MapMan:11.10.2.1.1	:	:	:	:	:

Description

BnaCnng78190DBnaCnng78190D protein (Fragment) [Source:UniProtKB/TrEMBL;Acc:A0A078K3Q4]

Coordinates

chrLK051659:-:416..851

Molecular Weight (calculated)

12023.9 Da

IEP (calculated)

9.965

GRAVY (calculated)

-0.623

Length

113 amino acids

Sequence
(BLAST)

001: PVKPTPTTPV TTPPPVKPPV NPIPSPPVNA PPVKPPTPPA KPPTPPPVRT RLDCVPLCGT RCGQHSRQNV CMRACVTCCY RCKCVPPGTY GNKEKCGSCY
101: ANMKTRGGRP KCP

Best Arabidopsis Sequence Match ( AT5G14920.1 )
(BLAST)

001: MALSLLSVFI FFHVFTNVVF AASNEESNAL VSLPTPTLPS PSPATKPPSP ALKPPTPSYK PPTLPTTPIK PPTTKPPVKP PTIPVTPVKP PVSTPPIKLP
101: PVQPPTYKPP TPTVKPPSVQ PPTYKPPTPT VKPPTTSPVK PPTTPPVQSP PVQPPTYKPP TSPVKPPTTT PPVKPPTTTP PVQPPTYNPP TTPVKPPTAP
201: PVKPPTPPPV RTRIDCVPLC GTRCGQHSRK NVCMRACVTC CYRCKCVPPG TYGNKEKCGS CYANMKTRGG KSKCP

Arabidopsis Description

GASA14Gibberellin-regulated protein 14 [Source:UniProtKB/Swiss-Prot;Acc:Q9LFR3]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.