Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 8
- endoplasmic reticulum 5
- vacuole 5
- plasma membrane 5
- golgi 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra029227.1-P | Field mustard | extracellular | 94.95 | 94.95 |
| CDY30303 | Canola | extracellular | 90.91 | 89.11 |
| CDY44046 | Canola | extracellular | 87.88 | 88.78 |
| CDY39057 | Canola | extracellular | 87.88 | 88.78 |
| CDY13540 | Canola | extracellular | 84.85 | 85.71 |
| CDY47499 | Canola | extracellular | 83.84 | 84.69 |
| CDY68406 | Canola | extracellular | 83.84 | 84.69 |
| CDX73193 | Canola | extracellular | 82.83 | 83.67 |
| CDX85912 | Canola | extracellular | 81.82 | 82.65 |
| AT1G75750.1 | Thale cress | extracellular | 80.81 | 81.63 |
| AT2G18420.1 | Thale cress | extracellular | 62.63 | 65.96 |
| VIT_18s0001g14270.t01 | Wine grape | extracellular | 63.64 | 64.29 |
| KRH17433 | Soybean | extracellular | 63.64 | 63.64 |
| KRH05956 | Soybean | extracellular | 63.64 | 63.64 |
| Solyc01g111080.2.1 | Tomato | nucleus | 63.64 | 60.58 |
| KRH51705 | Soybean | extracellular | 60.61 | 60.0 |
| PGSC0003DMT400004046 | Potato | extracellular | 62.63 | 59.62 |
| KRH61042 | Soybean | extracellular | 59.6 | 59.0 |
| TraesCS1A01G270100.1 | Wheat | extracellular | 48.48 | 52.17 |
| HORVU1Hr1G074530.1 | Barley | extracellular | 47.47 | 51.09 |
| Zm00001d010193_P001 | Maize | extracellular | 45.45 | 47.87 |
| TraesCS1D01G270100.1 | Wheat | extracellular | 44.44 | 47.83 |
| TraesCS1D01G270300.1 | Wheat | extracellular | 44.44 | 47.83 |
| EES13089 | Sorghum | extracellular | 53.54 | 47.75 |
| CDX90726 | Canola | extracellular | 47.47 | 47.47 |
| KXG21918 | Sorghum | extracellular | 45.45 | 46.88 |
| CDY05065 | Canola | extracellular | 47.47 | 46.53 |
| Os05t0432200-00 | Rice | extracellular | 42.42 | 45.65 |
| EES18282 | Sorghum | extracellular | 43.43 | 45.26 |
| CDY21382 | Canola | extracellular | 49.49 | 40.83 |
| CDY43288 | Canola | extracellular | 48.48 | 40.0 |
| CDY04794 | Canola | extracellular | 48.48 | 40.0 |
| HORVU1Hr1G074580.1 | Barley | extracellular | 44.44 | 37.61 |
| CDY72537 | Canola | plastid | 41.41 | 36.28 |
| CDY31392 | Canola | extracellular | 45.45 | 18.0 |
| CDY09898 | Canola | extracellular | 45.45 | 18.0 |
Protein Annotations
| EnsemblPlants:CDY65245 | EnsemblPlantsGene:GSBRNA2T00045457001 | InterPro:GASA | PANTHER:PTHR23201 | PANTHER:PTHR23201:SF2 | PFAM:PF02704 |
| ProteinID:CDY65245 | ProteinID:CDY65245.1 | SEG:seg | SignalP:SignalP-noTM | UniParc:UPI0004EF2236 | UniProt:A0A078JFL1 |
| MapMan:11.10.2.1.1 | : | : | : | : | : |
Description
BnaUnng01070DBnaUnng01070D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JFL1]
Coordinates
chrLK034705:-:13803..14467
Molecular Weight (calculated)
10585.1 Da
IEP (calculated)
8.685
GRAVY (calculated)
0.047
Length
99 amino acids
Sequence
(BLAST)
(BLAST)
1: MAISKAFIAS LLISLLVLQL VEADVEVSNK KNGPYGPKID CGTACIARCR LSSRPNLCHR ACGTCCTTCN CVPPGTYGNY DKCKCYAGLI THGGRRKCP
1: MAISKALIAS LLISLLVLQL VQADVENSQK KNGYAKKIDC GSACVARCRL SRRPRLCHRA CGTCCYRCNC VPPGTYGNYD KCQCYASLTT HGGRRKCP
Arabidopsis Description
GASA1GASA1 [Source:UniProtKB/TrEMBL;Acc:A0A178W4S5]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.