Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 8
- endoplasmic reticulum 6
- vacuole 6
- plasma membrane 5
- golgi 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G75750.1 | EES01073 | AT2G42580.1 | 19000166 |
| AT1G75750.1 | EES02247 | AT2G42580.1 | 19000166 |
| AT1G75750.1 | OQU78515 | AT2G42580.1 | 19000166 |
| AT1G75750.1 | KXG22896 | AT3G54220.1 | 19228333 |
| AT1G75750.1 | OQU82754 | AT3G54220.1 | 19228333 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY68406 | Canola | extracellular | 52.25 | 59.18 |
| CDX85912 | Canola | extracellular | 52.25 | 59.18 |
| AT1G75750.1 | Thale cress | extracellular | 51.35 | 58.16 |
| Bra008222.1-P | Field mustard | extracellular | 51.35 | 58.16 |
| CDY47499 | Canola | extracellular | 51.35 | 58.16 |
| CDY44046 | Canola | extracellular | 51.35 | 58.16 |
| CDY39057 | Canola | extracellular | 51.35 | 58.16 |
| CDY30303 | Canola | extracellular | 52.25 | 57.43 |
| CDX73193 | Canola | extracellular | 50.45 | 57.14 |
| CDY13540 | Canola | extracellular | 50.45 | 57.14 |
| KRH05956 | Soybean | extracellular | 50.45 | 56.57 |
| Bra038550.1-P | Field mustard | extracellular | 51.35 | 56.44 |
| VIT_18s0001g14270.t01 | Wine grape | extracellular | 49.55 | 56.12 |
| KRH17433 | Soybean | extracellular | 49.55 | 55.56 |
| Bra029227.1-P | Field mustard | extracellular | 48.65 | 54.55 |
| AT4G09600.1 | Thale cress | extracellular | 48.65 | 54.55 |
| AT2G18420.1 | Thale cress | extracellular | 45.95 | 54.26 |
| CDY65245 | Canola | extracellular | 47.75 | 53.54 |
| PGSC0003DMT400004046 | Potato | extracellular | 49.55 | 52.88 |
| CDX90726 | Canola | extracellular | 46.85 | 52.53 |
| CDY05065 | Canola | extracellular | 47.75 | 52.48 |
| Solyc01g111080.2.1 | Tomato | nucleus | 48.65 | 51.92 |
| KRH51705 | Soybean | extracellular | 45.95 | 51.0 |
| KRH61042 | Soybean | extracellular | 45.05 | 50.0 |
| AT4G09610.1 | Thale cress | extracellular | 44.14 | 49.49 |
| KXG21918 | Sorghum | extracellular | 42.34 | 48.96 |
| EES18282 | Sorghum | extracellular | 41.44 | 48.42 |
| OQU81731 | Sorghum | extracellular | 37.84 | 37.5 |
Protein Annotations
| EnsemblPlants:EES13089 | EnsemblPlantsGene:SORBI_3006G264800 | EntrezGene:8085856 | InterPro:GASA | PANTHER:PTHR23201 | PANTHER:PTHR23201:SF2 |
| PFAM:PF02704 | ProteinID:EES13089 | ProteinID:EES13089.1 | RefSeq:XP_002448761.1 | SEG:seg | SignalP:SignalP-noTM |
| TMHMM:TMhelix | UniParc:UPI0001A875B3 | UniProt:C5YAG6 | MapMan:11.10.2.1.1 | : | : |
Description
hypothetical protein
Coordinates
chr6:-:59888292..59888755
Molecular Weight (calculated)
10946.2 Da
IEP (calculated)
8.110
GRAVY (calculated)
0.268
Length
111 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAASGRAPA ACALLLLLLA LGVVAAAVDA SQEEELSPGS PSPAPSPASS IDCGSACAAR CALSSRQKLC RRACGSCCAR CNCVPPGTAG NHDVCPCYAA
101: ITTRGARPKC P
101: ITTRGARPKC P
1: MAISKALIAS LLISLLVLQL VQADVENSQK KNGYAKKIDC GSACVARCRL SRRPRLCHRA CGTCCYRCNC VPPGTYGNYD KCQCYASLTT HGGRRKCP
Arabidopsis Description
GASA1GASA1 [Source:UniProtKB/TrEMBL;Acc:A0A178W4S5]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.