Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 7
- endoplasmic reticulum 6
- vacuole 6
- plasma membrane 5
- golgi 6
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400043358 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G75750.1 | PGSC0003DMT400043358 | AT3G54220.1 | 19228333 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc01g111080.2.1 | Tomato | nucleus | 96.15 | 96.15 |
| KRH17433 | Soybean | extracellular | 67.31 | 70.71 |
| KRH05956 | Soybean | extracellular | 66.35 | 69.7 |
| CDY47499 | Canola | extracellular | 65.38 | 69.39 |
| AT1G75750.1 | Thale cress | extracellular | 65.38 | 69.39 |
| VIT_18s0001g14270.t01 | Wine grape | extracellular | 65.38 | 69.39 |
| CDX73193 | Canola | extracellular | 65.38 | 69.39 |
| CDY13540 | Canola | extracellular | 62.5 | 66.33 |
| CDY39057 | Canola | extracellular | 62.5 | 66.33 |
| CDY44046 | Canola | extracellular | 62.5 | 66.33 |
| Bra008222.1-P | Field mustard | extracellular | 62.5 | 66.33 |
| CDX85912 | Canola | extracellular | 61.54 | 65.31 |
| CDY68406 | Canola | extracellular | 61.54 | 65.31 |
| Bra038550.1-P | Field mustard | extracellular | 62.5 | 64.36 |
| CDY30303 | Canola | extracellular | 62.5 | 64.36 |
| KRH51705 | Soybean | extracellular | 60.58 | 63.0 |
| CDY65245 | Canola | extracellular | 59.62 | 62.63 |
| AT2G18420.1 | Thale cress | extracellular | 55.77 | 61.7 |
| Bra029227.1-P | Field mustard | extracellular | 58.65 | 61.62 |
| KRH61042 | Soybean | extracellular | 58.65 | 61.0 |
| PGSC0003DMT400009367 | Potato | extracellular | 52.88 | 53.4 |
| AT4G09610.1 | Thale cress | extracellular | 50.0 | 52.53 |
| AT4G09600.1 | Thale cress | extracellular | 50.0 | 52.53 |
| PGSC0003DMT400009368 | Potato | extracellular | 50.96 | 51.96 |
| EES18282 | Sorghum | extracellular | 47.12 | 51.58 |
| CDX90726 | Canola | extracellular | 49.04 | 51.52 |
| CDY05065 | Canola | extracellular | 50.0 | 51.49 |
| TraesCS1A01G270100.1 | Wheat | extracellular | 45.19 | 51.09 |
| Os05t0432200-00 | Rice | extracellular | 45.19 | 51.09 |
| KXG21918 | Sorghum | extracellular | 47.12 | 51.04 |
| HORVU1Hr1G074530.1 | Barley | extracellular | 44.23 | 50.0 |
| EES13089 | Sorghum | extracellular | 52.88 | 49.55 |
| PGSC0003DMT400023914 | Potato | extracellular | 49.04 | 49.51 |
| Zm00001d010193_P001 | Maize | extracellular | 44.23 | 48.94 |
| TraesCS1D01G270300.1 | Wheat | extracellular | 43.27 | 48.91 |
| TraesCS1D01G270100.1 | Wheat | extracellular | 41.35 | 46.74 |
| PGSC0003DMT400075426 | Potato | extracellular | 46.15 | 42.48 |
| PGSC0003DMT400040298 | Potato | extracellular | 33.65 | 38.89 |
| HORVU1Hr1G074580.1 | Barley | extracellular | 42.31 | 37.61 |
| PGSC0003DMT400062877 | Potato | extracellular | 49.04 | 35.66 |
Protein Annotations
| EntrezGene:102582131 | MapMan:11.10.2.1.1 | ProteinID:ABL74292 | ProteinID:ABL74292.1 | ProteinID:ACF74550 | ProteinID:ACF74550.2 |
| ProteinID:ACF74551 | ProteinID:ACF74551.2 | ProteinID:ACF74552 | ProteinID:ACF74552.2 | ProteinID:AEE98996 | ProteinID:AEE98996.1 |
| EMBL:AJ312424 | EMBL:AJ312904 | UniProt:B5AGT4 | ProteinID:CAC44011 | ProteinID:CAC44011.1 | ProteinID:CAC44012 |
| ProteinID:CAC44012.1 | EMBL:EF112176 | EMBL:EU848497 | EMBL:EU848498 | EMBL:EU848499 | InterPro:GASA |
| GO:GO:0005575 | GO:GO:0005576 | GO:GO:0005618 | GO:GO:0005623 | GO:GO:0006950 | GO:GO:0006952 |
| GO:GO:0008150 | GO:GO:0030312 | EMBL:JF683606 | RefSeq:NP_001275092.1 | PFAM:PF02704 | EnsemblPlantsGene:PGSC0003DMG400001598 |
| PGSC:PGSC0003DMG400001598 | EnsemblPlants:PGSC0003DMT400004046 | PANTHER:PTHR23201 | PANTHER:PTHR23201:SF2 | UniProt:Q93X17 | SignalP:SignalP-noTM |
| UniParc:UPI000009F9C8 | SEG:seg | : | : | : | : |
Description
SN2Snakin-2 [Source:UniProtKB/Swiss-Prot;Acc:Q93X17]
Coordinates
chr1:-:87145671..87146801
Molecular Weight (calculated)
11038.4 Da
IEP (calculated)
8.561
GRAVY (calculated)
-0.031
Length
104 amino acids
Sequence
(BLAST)
(BLAST)
001: MAISKALFAS LLLSLLLLEQ VQSIQTDQVT SNAISEAAYS YKKIDCGGAC AARCRLSSRP RLCNRACGTC CARCNCVPPG TSGNTETCPC YASLTTHGNK
101: RKCP
101: RKCP
1: MAISKALIAS LLISLLVLQL VQADENSQKK NGYAKKIDCG SACVARCRLS RRPRLCHRAC GTCCYRCNCV PPGTYGNYDK CQCYASLTTH GGRRKCP
Arabidopsis Description
GASA1GASA1 [Source:UniProtKB/TrEMBL;Acc:A0A178W4S5]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.