Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- extracellular 8
- endoplasmic reticulum 6
- vacuole 6
- plasma membrane 5
- golgi 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc10g074680.1.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G75750.1 | Solyc10g074680.1.1 | AT3G54220.1 | 19228333 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400004046 | Potato | extracellular | 96.15 | 96.15 |
| KRH17433 | Soybean | extracellular | 67.31 | 70.71 |
| CDY47499 | Canola | extracellular | 66.35 | 70.41 |
| CDX73193 | Canola | extracellular | 66.35 | 70.41 |
| AT1G75750.1 | Thale cress | extracellular | 66.35 | 70.41 |
| KRH05956 | Soybean | extracellular | 66.35 | 69.7 |
| VIT_18s0001g14270.t01 | Wine grape | extracellular | 63.46 | 67.35 |
| Bra008222.1-P | Field mustard | extracellular | 63.46 | 67.35 |
| CDY44046 | Canola | extracellular | 63.46 | 67.35 |
| CDY39057 | Canola | extracellular | 63.46 | 67.35 |
| CDY13540 | Canola | extracellular | 63.46 | 67.35 |
| CDY68406 | Canola | extracellular | 62.5 | 66.33 |
| CDX85912 | Canola | extracellular | 62.5 | 66.33 |
| Solyc05g006160.2.1 | Tomato | mitochondrion | 40.38 | 65.62 |
| CDY30303 | Canola | extracellular | 63.46 | 65.35 |
| Bra038550.1-P | Field mustard | extracellular | 63.46 | 65.35 |
| KRH51705 | Soybean | extracellular | 61.54 | 64.0 |
| CDY65245 | Canola | extracellular | 60.58 | 63.64 |
| AT2G18420.1 | Thale cress | extracellular | 56.73 | 62.77 |
| Bra029227.1-P | Field mustard | extracellular | 59.62 | 62.63 |
| KRH61042 | Soybean | extracellular | 59.62 | 62.0 |
| CDX90726 | Canola | extracellular | 50.0 | 52.53 |
| AT4G09610.1 | Thale cress | extracellular | 50.0 | 52.53 |
| AT4G09600.1 | Thale cress | extracellular | 50.0 | 52.53 |
| EES18282 | Sorghum | extracellular | 47.12 | 51.58 |
| CDY05065 | Canola | extracellular | 50.0 | 51.49 |
| Solyc11g017440.1.1 | Tomato | extracellular, nucleus | 50.96 | 51.46 |
| Os05t0432200-00 | Rice | extracellular | 45.19 | 51.09 |
| KXG21918 | Sorghum | extracellular | 47.12 | 51.04 |
| Solyc02g083870.2.1 | Tomato | extracellular | 50.0 | 50.98 |
| HORVU1Hr1G074530.1 | Barley | extracellular | 44.23 | 50.0 |
| TraesCS1A01G270100.1 | Wheat | extracellular | 44.23 | 50.0 |
| Solyc02g083880.2.1 | Tomato | extracellular | 49.04 | 49.51 |
| Zm00001d010193_P001 | Maize | extracellular | 44.23 | 48.94 |
| EES13089 | Sorghum | extracellular | 51.92 | 48.65 |
| TraesCS1D01G270300.1 | Wheat | extracellular | 42.31 | 47.83 |
| TraesCS1D01G270100.1 | Wheat | extracellular | 40.38 | 45.65 |
| Solyc12g089300.1.1 | Tomato | extracellular | 44.23 | 41.07 |
| HORVU1Hr1G074580.1 | Barley | extracellular | 41.35 | 36.75 |
| Solyc03g113910.2.1 | Tomato | extracellular | 48.08 | 34.25 |
Protein Annotations
| EnsemblPlants:Solyc01g111080.2.1 | EnsemblPlantsGene:Solyc01g111080.2 | InterPro:GASA | PANTHER:PTHR23201 | PANTHER:PTHR23201:SF2 | PFAM:PF02704 |
| ProteinID:ADR32106.1 | ProteinID:AFQ40006.1 | SEG:seg | SignalP:SignalP-noTM | UniParc:UPI0001D6B081 | UniProt:E5KBY0 |
| MapMan:11.10.2.1.1 | : | : | : | : | : |
Description
Gibberellin-regulated protein 1 [Source:Projected from Arabidopsis thaliana (AT1G75750) UniProtKB/Swiss-Prot;Acc:P46689]
Coordinates
chr1:-:97442484..97466164
Molecular Weight (calculated)
10985.3 Da
IEP (calculated)
8.435
GRAVY (calculated)
-0.071
Length
104 amino acids
Sequence
(BLAST)
(BLAST)
001: MAISKALFAS LLLSLLLLEQ VQSIQTDQVS SNAISEGADS YKKIDCGGAC AARCRLSSRP RLCHRACGTC CARCNCVPPG TSGNTETCPC YASLTTHGNK
101: RKCP
101: RKCP
1: MAISKALIAS LLISLLVLQL VQADVENSQK KNGYAKKIDC GSACVARCRL SRRPRLCHRA CGTCCYRCNC VPPGTYGNYD KCQCYASLTT HGGRRKCP
Arabidopsis Description
GASA1GASA1 [Source:UniProtKB/TrEMBL;Acc:A0A178W4S5]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.