Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 7
- endoplasmic reticulum 6
- vacuole 5
- plasma membrane 5
- golgi 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY47499 | Canola | extracellular | 98.98 | 98.98 |
| AT1G75750.1 | Thale cress | extracellular | 91.84 | 91.84 |
| CDY44046 | Canola | extracellular | 88.78 | 88.78 |
| CDY39057 | Canola | extracellular | 88.78 | 88.78 |
| CDY68406 | Canola | extracellular | 87.76 | 87.76 |
| CDY13540 | Canola | extracellular | 87.76 | 87.76 |
| CDX85912 | Canola | extracellular | 85.71 | 85.71 |
| CDY30303 | Canola | extracellular | 85.71 | 83.17 |
| CDY65245 | Canola | extracellular | 83.67 | 82.83 |
| AT2G18420.1 | Thale cress | extracellular | 66.33 | 69.15 |
| VIT_18s0001g14270.t01 | Wine grape | extracellular | 67.35 | 67.35 |
| Solyc01g111080.2.1 | Tomato | nucleus | 70.41 | 66.35 |
| PGSC0003DMT400004046 | Potato | extracellular | 69.39 | 65.38 |
| KRH17433 | Soybean | extracellular | 65.31 | 64.65 |
| KRH05956 | Soybean | extracellular | 65.31 | 64.65 |
| KRH51705 | Soybean | extracellular | 63.27 | 62.0 |
| KRH61042 | Soybean | extracellular | 61.22 | 60.0 |
| TraesCS1A01G270100.1 | Wheat | extracellular | 52.04 | 55.43 |
| HORVU1Hr1G074530.1 | Barley | extracellular | 51.02 | 54.35 |
| TraesCS1D01G270100.1 | Wheat | extracellular | 48.98 | 52.17 |
| TraesCS1D01G270300.1 | Wheat | extracellular | 48.98 | 52.17 |
| EES13089 | Sorghum | extracellular | 57.14 | 50.45 |
| Zm00001d010193_P001 | Maize | extracellular | 47.96 | 50.0 |
| CDY05065 | Canola | extracellular | 51.02 | 49.51 |
| CDX90726 | Canola | extracellular | 50.0 | 49.49 |
| KXG21918 | Sorghum | extracellular | 47.96 | 48.96 |
| Os05t0432200-00 | Rice | extracellular | 45.92 | 48.91 |
| EES18282 | Sorghum | extracellular | 45.92 | 47.37 |
| CDY21382 | Canola | extracellular | 51.02 | 41.67 |
| CDY43288 | Canola | extracellular | 50.0 | 40.83 |
| CDY04794 | Canola | extracellular | 50.0 | 40.83 |
| HORVU1Hr1G074580.1 | Barley | extracellular | 47.96 | 40.17 |
| CDY72537 | Canola | plastid | 40.82 | 35.4 |
| CDY31392 | Canola | extracellular | 46.94 | 18.4 |
| CDY09898 | Canola | extracellular | 46.94 | 18.4 |
Protein Annotations
| EnsemblPlants:CDX73193 | EnsemblPlantsGene:GSBRNA2T00103686001 | InterPro:GASA | PANTHER:PTHR23201 | PANTHER:PTHR23201:SF2 | PFAM:PF02704 |
| ProteinID:CDX73193 | ProteinID:CDX73193.1 | SEG:seg | SignalP:SignalP-noTM | UniParc:UPI0004EDF6F2 | MapMan:11.10.2.1.1 |
Description
BnaC06g36410D
Coordinates
chrLK031797:-:2624077..2624913
Molecular Weight (calculated)
10683.2 Da
IEP (calculated)
9.308
GRAVY (calculated)
-0.146
Length
98 amino acids
Sequence
(BLAST)
(BLAST)
1: MAISKALIAS LLISLLVLQL VQADIENSNK KRGYRKKIDC GSACVARCRL SSRPNLCHRA CGTCCARCNC VPPGTYGNYD KCQCYATLTT HGGRRKCP
1: MAISKALIAS LLISLLVLQL VQADVENSQK KNGYAKKIDC GSACVARCRL SRRPRLCHRA CGTCCYRCNC VPPGTYGNYD KCQCYASLTT HGGRRKCP
Arabidopsis Description
GASA1GASA1 [Source:UniProtKB/TrEMBL;Acc:A0A178W4S5]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.