Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 7
- endoplasmic reticulum 6
- vacuole 5
- plasma membrane 5
- golgi 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY68406 | Canola | extracellular | 97.96 | 97.96 |
| CDY44046 | Canola | extracellular | 88.78 | 88.78 |
| CDY39057 | Canola | extracellular | 88.78 | 88.78 |
| CDY47499 | Canola | extracellular | 86.73 | 86.73 |
| CDX73193 | Canola | extracellular | 85.71 | 85.71 |
| CDY13540 | Canola | extracellular | 85.71 | 85.71 |
| CDY30303 | Canola | extracellular | 85.71 | 83.17 |
| AT1G75750.1 | Thale cress | extracellular | 82.65 | 82.65 |
| CDY65245 | Canola | extracellular | 82.65 | 81.82 |
| VIT_18s0001g14270.t01 | Wine grape | extracellular | 66.33 | 66.33 |
| AT2G18420.1 | Thale cress | extracellular | 63.27 | 65.96 |
| KRH17433 | Soybean | extracellular | 64.29 | 63.64 |
| KRH51705 | Soybean | extracellular | 64.29 | 63.0 |
| Solyc01g111080.2.1 | Tomato | nucleus | 66.33 | 62.5 |
| KRH05956 | Soybean | extracellular | 62.24 | 61.62 |
| PGSC0003DMT400004046 | Potato | extracellular | 65.31 | 61.54 |
| KRH61042 | Soybean | extracellular | 62.24 | 61.0 |
| TraesCS1A01G270100.1 | Wheat | extracellular | 52.04 | 55.43 |
| HORVU1Hr1G074530.1 | Barley | extracellular | 50.0 | 53.26 |
| EES13089 | Sorghum | extracellular | 59.18 | 52.25 |
| TraesCS1D01G270300.1 | Wheat | extracellular | 48.98 | 52.17 |
| TraesCS1D01G270100.1 | Wheat | extracellular | 47.96 | 51.09 |
| Zm00001d010193_P001 | Maize | extracellular | 48.98 | 51.06 |
| KXG21918 | Sorghum | extracellular | 48.98 | 50.0 |
| CDX90726 | Canola | extracellular | 50.0 | 49.49 |
| Os05t0432200-00 | Rice | extracellular | 45.92 | 48.91 |
| CDY05065 | Canola | extracellular | 50.0 | 48.51 |
| EES18282 | Sorghum | extracellular | 46.94 | 48.42 |
| CDY21382 | Canola | extracellular | 48.98 | 40.0 |
| HORVU1Hr1G074580.1 | Barley | extracellular | 46.94 | 39.32 |
| CDY43288 | Canola | extracellular | 47.96 | 39.17 |
| CDY04794 | Canola | extracellular | 47.96 | 39.17 |
| CDY72537 | Canola | plastid | 41.84 | 36.28 |
| CDY31392 | Canola | extracellular | 44.9 | 17.6 |
| CDY09898 | Canola | extracellular | 44.9 | 17.6 |
Protein Annotations
| EnsemblPlants:CDX85912 | EnsemblPlantsGene:GSBRNA2T00143743001 | InterPro:GASA | PANTHER:PTHR23201 | PANTHER:PTHR23201:SF2 | PFAM:PF02704 |
| ProteinID:CDX85912 | ProteinID:CDX85912.1 | SEG:seg | SignalP:SignalP-noTM | UniParc:UPI0004EBBD6C | MapMan:11.10.2.1.1 |
Description
BnaC06g22220D
Coordinates
chrLK031843:-:781968..782672
Molecular Weight (calculated)
10437.7 Da
IEP (calculated)
8.433
GRAVY (calculated)
-0.087
Length
98 amino acids
Sequence
(BLAST)
(BLAST)
1: MAISKALVAS LLVSLLVLQL VEADVESSNK KDGYGSKIDC GSACIARCKL SSRPNLCHRA CGTCCARCNC VPPSTYGNHD KCECYANLTT HGGRRKCP
1: MAIFRSTLVL LLILFCLTTF ELHVHAAEDS QVGEGVVKID CGGRCKGRCS KSSRPNLCLR ACNSCCYRCN CVPPGTAGNH HLCPCYASIT TRGGRLKCP
Arabidopsis Description
GASA3Gibberellin-regulated protein 3 [Source:UniProtKB/Swiss-Prot;Acc:P46687]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.