Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 7
- endoplasmic reticulum 4
- vacuole 4
- plasma membrane 4
- golgi 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G270300.1 | Wheat | extracellular | 94.57 | 94.57 |
| HORVU1Hr1G074580.1 | Barley | extracellular | 94.57 | 74.36 |
| Zm00001d010193_P001 | Maize | extracellular | 64.13 | 62.77 |
| Os05t0432200-00 | Rice | extracellular | 59.78 | 59.78 |
| KXG21918 | Sorghum | extracellular | 58.7 | 56.25 |
| EES18282 | Sorghum | extracellular | 56.52 | 54.74 |
| CDY13540 | Canola | extracellular | 54.35 | 51.02 |
| Bra008222.1-P | Field mustard | extracellular | 53.26 | 50.0 |
| CDY44046 | Canola | extracellular | 53.26 | 50.0 |
| CDY39057 | Canola | extracellular | 53.26 | 50.0 |
| VIT_18s0001g14270.t01 | Wine grape | extracellular | 52.17 | 48.98 |
| CDX73193 | Canola | extracellular | 52.17 | 48.98 |
| CDY47499 | Canola | extracellular | 52.17 | 48.98 |
| AT2G18420.1 | Thale cress | extracellular | 50.0 | 48.94 |
| AT1G75750.1 | Thale cress | extracellular | 51.09 | 47.96 |
| CDY68406 | Canola | extracellular | 51.09 | 47.96 |
| CDX85912 | Canola | extracellular | 51.09 | 47.96 |
| CDY30303 | Canola | extracellular | 52.17 | 47.52 |
| Bra038550.1-P | Field mustard | extracellular | 52.17 | 47.52 |
| CDX90726 | Canola | extracellular | 51.09 | 47.47 |
| AT4G09600.1 | Thale cress | extracellular | 51.09 | 47.47 |
| KRH17433 | Soybean | extracellular | 50.0 | 46.46 |
| Bra029227.1-P | Field mustard | extracellular | 50.0 | 46.46 |
| KRH05956 | Soybean | extracellular | 48.91 | 45.45 |
| AT4G09610.1 | Thale cress | extracellular | 48.91 | 45.45 |
| CDY05065 | Canola | extracellular | 48.91 | 44.55 |
| CDY65245 | Canola | extracellular | 47.83 | 44.44 |
| PGSC0003DMT400004046 | Potato | extracellular | 46.74 | 41.35 |
| KRH51705 | Soybean | extracellular | 44.57 | 41.0 |
| Solyc01g111080.2.1 | Tomato | nucleus | 45.65 | 40.38 |
| KRH61042 | Soybean | extracellular | 43.48 | 40.0 |
| TraesCS2D01G327800.1 | Wheat | extracellular | 41.3 | 35.51 |
Protein Annotations
| EnsemblPlants:TraesCS1D01G270100.1 | EnsemblPlantsGene:TraesCS1D01G270100 | InterPro:GASA | PANTHER:PTHR23201 | PANTHER:PTHR23201:SF12 | PFAM:PF02704 |
| SEG:seg | SignalP:SignalP-noTM | MapMan:11.10.2.1.1 | : | : | : |
Description
No Description!
Coordinates
chr1D:+:365244969..365245880
Molecular Weight (calculated)
9792.9 Da
IEP (calculated)
8.119
GRAVY (calculated)
-0.029
Length
92 amino acids
Sequence
(BLAST)
(BLAST)
1: MAGKARVFMC VALVVLLLLV ETTAPSGQAH AVDCGSACSY RCSKSSRPNL CNRACNTCCR RCDCVPPGTA GNEDVCPCYA HMTTHDGRHK CP
1: MAIFRSTLVL LLILFCLTTF ELHVHAAEDS QVGEGVVKID CGGRCKGRCS KSSRPNLCLR ACNSCCYRCN CVPPGTAGNH HLCPCYASIT TRGGRLKCP
Arabidopsis Description
GASA3Gibberellin-regulated protein 3 [Source:UniProtKB/Swiss-Prot;Acc:P46687]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.