Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 9
- endoplasmic reticulum 5
- vacuole 6
- plasma membrane 5
- golgi 6
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G75750.1 | EES01073 | AT2G42580.1 | 19000166 |
| AT1G75750.1 | EES02247 | AT2G42580.1 | 19000166 |
| AT1G75750.1 | OQU78515 | AT2G42580.1 | 19000166 |
| AT1G75750.1 | KXG22896 | AT3G54220.1 | 19228333 |
| AT1G75750.1 | OQU82754 | AT3G54220.1 | 19228333 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG21918 | Sorghum | extracellular | 87.37 | 86.46 |
| Os05t0432200-00 | Rice | extracellular | 72.63 | 75.0 |
| Zm00001d010193_P001 | Maize | extracellular | 71.58 | 72.34 |
| HORVU1Hr1G074530.1 | Barley | extracellular | 58.95 | 60.87 |
| TraesCS1D01G270300.1 | Wheat | extracellular | 57.89 | 59.78 |
| TraesCS1A01G270100.1 | Wheat | extracellular | 57.89 | 59.78 |
| TraesCS1D01G270100.1 | Wheat | extracellular | 54.74 | 56.52 |
| KRH05956 | Soybean | extracellular | 51.58 | 49.49 |
| KRH51705 | Soybean | extracellular | 51.58 | 49.0 |
| AT4G09610.1 | Thale cress | extracellular | 50.53 | 48.48 |
| KRH17433 | Soybean | extracellular | 50.53 | 48.48 |
| KRH61042 | Soybean | extracellular | 50.53 | 48.0 |
| VIT_18s0001g14270.t01 | Wine grape | extracellular | 49.47 | 47.96 |
| AT2G18420.1 | Thale cress | extracellular | 47.37 | 47.87 |
| Solyc01g111080.2.1 | Tomato | nucleus | 51.58 | 47.12 |
| PGSC0003DMT400004046 | Potato | extracellular | 51.58 | 47.12 |
| HORVU1Hr1G074580.1 | Barley | extracellular | 57.89 | 47.01 |
| CDY44046 | Canola | extracellular | 48.42 | 46.94 |
| AT1G75750.1 | Thale cress | extracellular | 48.42 | 46.94 |
| Bra008222.1-P | Field mustard | extracellular | 48.42 | 46.94 |
| CDY39057 | Canola | extracellular | 48.42 | 46.94 |
| CDY13540 | Canola | extracellular | 48.42 | 46.94 |
| CDX85912 | Canola | extracellular | 48.42 | 46.94 |
| AT4G09600.1 | Thale cress | extracellular | 48.42 | 46.46 |
| CDY47499 | Canola | extracellular | 47.37 | 45.92 |
| CDX73193 | Canola | extracellular | 47.37 | 45.92 |
| CDY68406 | Canola | extracellular | 47.37 | 45.92 |
| CDY30303 | Canola | extracellular | 48.42 | 45.54 |
| Bra038550.1-P | Field mustard | extracellular | 48.42 | 45.54 |
| Bra029227.1-P | Field mustard | extracellular | 47.37 | 45.45 |
| CDX90726 | Canola | extracellular | 45.26 | 43.43 |
| CDY65245 | Canola | extracellular | 45.26 | 43.43 |
| CDY05065 | Canola | extracellular | 44.21 | 41.58 |
| EES13089 | Sorghum | extracellular | 48.42 | 41.44 |
| OQU81731 | Sorghum | extracellular | 38.95 | 33.04 |
Protein Annotations
| EnsemblPlants:EES18282 | EnsemblPlantsGene:SORBI_3009G149100 | EntrezGene:8058507 | InterPro:GASA | PANTHER:PTHR23201 | PANTHER:PTHR23201:SF12 |
| PFAM:PF02704 | ProteinID:EES18282 | ProteinID:EES18282.1 | RefSeq:XP_002439852.1 | SEG:seg | SignalP:SignalP-noTM |
| unigene:Sbi.10209 | UniParc:UPI0001A887FE | UniProt:C5YYD5 | MapMan:11.10.2.1.1 | : | : |
Description
hypothetical protein
Coordinates
chr9:+:50616017..50616978
Molecular Weight (calculated)
9884.0 Da
IEP (calculated)
8.304
GRAVY (calculated)
0.044
Length
95 amino acids
Sequence
(BLAST)
(BLAST)
1: MASTSASGRL LFSLSLVVLV LLVETTAPHG QAEAIDCGAS CAYRCSKSGR PKMCLRACGT CCQRCGCVPP GTSGNENVCP CYANMTTHNG KHKCP
1: MAISKALIAS LLISLLVLQL VQADVENSQK KNGYAKKIDC GSACVARCRL SRRPRLCHRA CGTCCYRCNC VPPGTYGNYD KCQCYASLTT HGGRRKCP
Arabidopsis Description
GASA1GASA1 [Source:UniProtKB/TrEMBL;Acc:A0A178W4S5]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.