Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 6
- endoplasmic reticulum 3
- vacuole 3
- plasma membrane 3
- golgi 3
Predictors | GFP | MS/MS | Papers | ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
locusB | locations |
---|---|
HORVU1Hr1G093390.2 | |
HORVU3Hr1G027650.2 | |
HORVU3Hr1G054240.2 | |
HORVU5Hr1G045920.2 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
TraesCS1A01G270100.1 | Wheat | extracellular | 92.39 | 92.39 |
KXG21918 | Sorghum | extracellular | 65.22 | 62.5 |
HORVU1Hr1G074580.1 | Barley | extracellular | 76.09 | 59.83 |
Os05t0432200-00 | Rice | extracellular | 59.78 | 59.78 |
Zm00001d010193_P001 | Maize | extracellular | 60.87 | 59.57 |
EES18282 | Sorghum | extracellular | 60.87 | 58.95 |
Bra008222.1-P | Field mustard | extracellular | 55.43 | 52.04 |
CDY44046 | Canola | extracellular | 55.43 | 52.04 |
CDY39057 | Canola | extracellular | 55.43 | 52.04 |
CDY13540 | Canola | extracellular | 55.43 | 52.04 |
AT4G09600.1 | Thale cress | extracellular | 55.43 | 51.52 |
AT2G18420.1 | Thale cress | extracellular | 52.17 | 51.06 |
CDY47499 | Canola | extracellular | 54.35 | 51.02 |
CDX73193 | Canola | extracellular | 54.35 | 51.02 |
KRH17433 | Soybean | extracellular | 54.35 | 50.51 |
CDX90726 | Canola | extracellular | 54.35 | 50.51 |
KRH05956 | Soybean | extracellular | 54.35 | 50.51 |
CDX85912 | Canola | extracellular | 53.26 | 50.0 |
CDY05065 | Canola | extracellular | 54.35 | 49.51 |
CDY30303 | Canola | extracellular | 54.35 | 49.51 |
Bra029227.1-P | Field mustard | extracellular | 53.26 | 49.49 |
AT4G09610.1 | Thale cress | extracellular | 53.26 | 49.49 |
CDY68406 | Canola | extracellular | 52.17 | 48.98 |
VIT_18s0001g14270.t01 | Wine grape | extracellular | 52.17 | 48.98 |
AT1G75750.1 | Thale cress | extracellular | 52.17 | 48.98 |
Bra038550.1-P | Field mustard | extracellular | 53.26 | 48.51 |
CDY65245 | Canola | extracellular | 51.09 | 47.47 |
PGSC0003DMT400004046 | Potato | extracellular | 50.0 | 44.23 |
Solyc01g111080.2.1 | Tomato | nucleus | 50.0 | 44.23 |
KRH51705 | Soybean | extracellular | 47.83 | 44.0 |
KRH61042 | Soybean | extracellular | 46.74 | 43.0 |
Protein Annotations
EnsemblPlants:HORVU1Hr1G074530.1 | EnsemblPlantsGene:HORVU1Hr1G074530 | InterPro:GASA | PANTHER:PTHR23201 | PANTHER:PTHR23201:SF12 | PFAM:PF02704 |
SEG:seg | SignalP:SignalP-noTM | UniParc:UPI000B479E49 | UniProt:A0A287G8Z9 | MapMan:11.10.2.1.1 | : |
Description
No Description!
Coordinates
chrchr1H:+:508283184..508284948
Molecular Weight (calculated)
9694.8 Da
IEP (calculated)
8.254
GRAVY (calculated)
-0.001
Length
92 amino acids
Sequence
(BLAST)
(BLAST)
1: MAGKARVFMC VALVVLLLLV ETTAPRGQAD AVDCGGACSY RCSKSSRPNL CGRACNTCCR RCGCVPPGTA GNEDVCPCYA HMTTHDGRHK CP
1: MAIFRSTLVL LLILFCLTTF ELHVHAAEDS QVGEGVVKID CGGRCKGRCS KSSRPNLCLR ACNSCCYRCN CVPPGTAGNH HLCPCYASIT TRGGRLKCP
Arabidopsis Description
GASA3Gibberellin-regulated protein 3 [Source:UniProtKB/Swiss-Prot;Acc:P46687]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.