Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5B01G143100.1 | Wheat | plastid | 97.78 | 89.66 |
| TraesCS5A01G144000.1 | Wheat | plastid | 96.58 | 87.19 |
| TraesCS5D01G148000.1 | Wheat | plastid | 96.92 | 86.83 |
| KXG22896 | Sorghum | cytosol, plasma membrane | 72.31 | 80.27 |
| Bra007056.1-P | Field mustard | mitochondrion, plastid | 41.37 | 76.58 |
| Os11t0124300-01 | Rice | nucleus, plastid | 83.42 | 74.96 |
| Os12t0122000-01 | Rice | plastid | 83.93 | 74.39 |
| Zm00001d052380_P001 | Maize | plastid | 83.59 | 73.2 |
| Zm00001d005029_P001 | Maize | plastid | 80.85 | 69.76 |
| OQU82754 | Sorghum | plastid | 83.25 | 68.5 |
| GSMUA_Achr11P... | Banana | plastid | 59.66 | 60.8 |
| CDX78219 | Canola | nucleus, plastid | 58.97 | 57.21 |
| CDX73496 | Canola | nucleus, plastid | 60.0 | 56.43 |
| AT3G54220.1 | Thale cress | nucleus, plastid | 59.83 | 53.6 |
| GSMUA_Achr8P09400_001 | Banana | cytosol | 61.37 | 53.42 |
| GSMUA_Achr5P21440_001 | Banana | nucleus, plastid | 59.66 | 49.36 |
| HORVU0Hr1G003230.2 | Barley | mitochondrion | 38.12 | 48.16 |
| VIT_08s0056g00050.t01 | Wine grape | nucleus | 63.25 | 47.31 |
| Solyc10g074680.1.1 | Tomato | cytosol | 62.56 | 44.31 |
| PGSC0003DMT400043358 | Potato | cytosol | 62.39 | 44.19 |
| KRH40615 | Soybean | nucleus, plastid | 60.17 | 42.77 |
| KRH00551 | Soybean | nucleus, plastid | 60.51 | 42.04 |
| HORVU3Hr1G106260.1 | Barley | cytosol | 11.11 | 36.31 |
| HORVU1Hr1G069140.1 | Barley | cytosol | 28.72 | 35.97 |
| HORVU3Hr1G088820.1 | Barley | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 14.36 | 32.31 |
| HORVU7Hr1G091000.1 | Barley | cytosol | 22.39 | 30.75 |
| HORVU6Hr1G033280.1 | Barley | cytosol | 21.37 | 28.03 |
| HORVU0Hr1G004640.1 | Barley | mitochondrion, nucleus, plastid | 22.91 | 27.97 |
| HORVU2Hr1G113490.1 | Barley | cytosol | 14.87 | 27.62 |
| HORVU2Hr1G113480.1 | Barley | cytosol | 14.87 | 27.62 |
| HORVU7Hr1G010620.1 | Barley | cytosol | 26.32 | 27.35 |
| HORVU3Hr1G058100.1 | Barley | plastid | 25.81 | 26.82 |
| HORVU3Hr1G088780.2 | Barley | cytosol | 24.1 | 26.55 |
| HORVU1Hr1G090800.1 | Barley | mitochondrion | 23.25 | 25.37 |
| HORVU4Hr1G026010.3 | Barley | cytosol | 19.32 | 25.34 |
| HORVU4Hr1G006930.1 | Barley | nucleus | 26.5 | 25.08 |
| HORVU4Hr1G008930.3 | Barley | cytosol, mitochondrion | 14.36 | 23.8 |
| HORVU5Hr1G043310.1 | Barley | cytosol | 22.05 | 23.45 |
| HORVU2Hr1G113360.1 | Barley | cytosol | 18.63 | 22.95 |
| HORVU4Hr1G008980.3 | Barley | mitochondrion, nucleus | 21.37 | 22.6 |
Protein Annotations
| MapMan:15.5.12 | MapMan:26.3.1.5 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008356 |
| GO:GO:0009058 | GO:GO:0009605 | GO:GO:0009606 | GO:GO:0009628 | GO:GO:0009630 | GO:GO:0009956 |
| GO:GO:0009987 | GO:GO:0030154 | GO:GO:0043565 | GO:GO:0048366 | GO:GO:0051457 | GO:GO:0090610 |
| EnsemblPlantsGene:HORVU5Hr1G045920 | EnsemblPlants:HORVU5Hr1G045920.2 | InterPro:IPR005202 | UniProt:M0Y0N4 | PFAM:PF03514 | PFscan:PS50985 |
| PANTHER:PTHR31636 | PANTHER:PTHR31636:SF12 | InterPro:TF_GRAS | UniParc:UPI000296072E | SEG:seg | : |
Description
No Description!
Coordinates
chrchr5H:-:356593160..356596353
Molecular Weight (calculated)
62836.0 Da
IEP (calculated)
6.555
GRAVY (calculated)
-0.172
Length
585 amino acids
Sequence
(BLAST)
(BLAST)
001: MVRKRPATDM DLPPPQRHVT GDLSDMTAGP PVLSSATAQL PALPSQLLPP FQLQHQHVDH MDVAGAAPAQ AGEAANTTAF VDGIIRDIIG SSGAGVSVAQ
101: LIHNVREIIH PCNPGLASLL ELRLRSLLAS DPAPPQQHQP ALLPNAAQMP MAALPPPPPD KRRREEEREA NNPPQSPKPP SAEETAAAAA AASAAVKERK
201: EGQRRKQRDE EGLHLLKLLL QCAESVNADN LDEAQTALLE IAELATPFGT STQRVAAYFA EAVSARLVSS CLGLYAPLPH ASPAASRLVN GRVAAAFQVF
301: NGISPLVKFS HFTANQAIQE AFEREERVHI IDLDIMQGLQ WPGLFHILAS RPGGPPRVRL TGLGASMDAL EATGKRLSDF ADTLGLPFEF CPVADKAGNL
401: DPEKLGVTRR EAVAVHWLHH SLYDVTGSDS NTLCLIKRLA PKVVTMVEQD LRHTGSFLAR FVDAIHYYSA LFDSLDASYG EDSPERHVVE QQLLSREIRN
501: VLAVGGPSRT GDVKFGCWRD RLARSGFGAA SLAGSATAQA ALLLGMFPSD GYTLLEENGA LKLGWKDLTL LTASAWRPMH TTSGR
101: LIHNVREIIH PCNPGLASLL ELRLRSLLAS DPAPPQQHQP ALLPNAAQMP MAALPPPPPD KRRREEEREA NNPPQSPKPP SAEETAAAAA AASAAVKERK
201: EGQRRKQRDE EGLHLLKLLL QCAESVNADN LDEAQTALLE IAELATPFGT STQRVAAYFA EAVSARLVSS CLGLYAPLPH ASPAASRLVN GRVAAAFQVF
301: NGISPLVKFS HFTANQAIQE AFEREERVHI IDLDIMQGLQ WPGLFHILAS RPGGPPRVRL TGLGASMDAL EATGKRLSDF ADTLGLPFEF CPVADKAGNL
401: DPEKLGVTRR EAVAVHWLHH SLYDVTGSDS NTLCLIKRLA PKVVTMVEQD LRHTGSFLAR FVDAIHYYSA LFDSLDASYG EDSPERHVVE QQLLSREIRN
501: VLAVGGPSRT GDVKFGCWRD RLARSGFGAA SLAGSATAQA ALLLGMFPSD GYTLLEENGA LKLGWKDLTL LTASAWRPMH TTSGR
001: MAESGDFNGG QPPPHSPLRT TSSGSSSSNN RGPPPPPPPP LVMVRKRLAS EMSSNPDYNN SSRPPRRVSH LLDSNYNTVT PQQPPSLTAA ATVSSQPNPP
101: LSVCGFSGLP VFPSDRGGRN VMMSVQPMDQ DSSSSSASPT VWVDAIIRDL IHSSTSVSIP QLIQNVRDII FPCNPNLGAL LEYRLRSLML LDPSSSSDPS
201: PQTFEPLYQI SNNPSPPQQQ QQHQQQQQQH KPPPPPIQQQ ERENSSTDAP PQPETVTATV PAVQTNTAEA LRERKEEIKR QKQDEEGLHL LTLLLQCAEA
301: VSADNLEEAN KLLLEISQLS TPYGTSAQRV AAYFSEAMSA RLLNSCLGIY AALPSRWMPQ THSLKMVSAF QVFNGISPLV KFSHFTANQA IQEAFEKEDS
401: VHIIDLDIMQ GLQWPGLFHI LASRPGGPPH VRLTGLGTSM EALQATGKRL SDFADKLGLP FEFCPLAEKV GNLDTERLNV RKREAVAVHW LQHSLYDVTG
501: SDAHTLWLLQ RLAPKVVTVV EQDLSHAGSF LGRFVEAIHY YSALFDSLGA SYGEESEERH VVEQQLLSKE IRNVLAVGGP SRSGEVKFES WREKMQQCGF
601: KGISLAGNAA TQATLLLGMF PSDGYTLVDD NGTLKLGWKD LSLLTASAWT PRS
101: LSVCGFSGLP VFPSDRGGRN VMMSVQPMDQ DSSSSSASPT VWVDAIIRDL IHSSTSVSIP QLIQNVRDII FPCNPNLGAL LEYRLRSLML LDPSSSSDPS
201: PQTFEPLYQI SNNPSPPQQQ QQHQQQQQQH KPPPPPIQQQ ERENSSTDAP PQPETVTATV PAVQTNTAEA LRERKEEIKR QKQDEEGLHL LTLLLQCAEA
301: VSADNLEEAN KLLLEISQLS TPYGTSAQRV AAYFSEAMSA RLLNSCLGIY AALPSRWMPQ THSLKMVSAF QVFNGISPLV KFSHFTANQA IQEAFEKEDS
401: VHIIDLDIMQ GLQWPGLFHI LASRPGGPPH VRLTGLGTSM EALQATGKRL SDFADKLGLP FEFCPLAEKV GNLDTERLNV RKREAVAVHW LQHSLYDVTG
501: SDAHTLWLLQ RLAPKVVTVV EQDLSHAGSF LGRFVEAIHY YSALFDSLGA SYGEESEERH VVEQQLLSKE IRNVLAVGGP SRSGEVKFES WREKMQQCGF
601: KGISLAGNAA TQATLLLGMF PSDGYTLVDD NGTLKLGWKD LSLLTASAWT PRS
Arabidopsis Description
SCRProtein SCARECROW [Source:UniProtKB/Swiss-Prot;Acc:Q9M384]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.