Subcellular Localization
min:
: max
Winner_takes_all: cytosol, nucleus, plastid
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU1Hr1G071330.3 | nucleus |
| HORVU2Hr1G004820.2 | nucleus |
| HORVU4Hr1G013700.2 | nucleus |
| HORVU4Hr1G039870.1 | |
| HORVU4Hr1G039880.1 | |
| HORVU5Hr1G018180.1 | nucleus |
| HORVU5Hr1G050270.8 | nucleus, nucleus |
| HORVU5Hr1G059770.2 | nucleus |
| HORVU7Hr1G073410.1 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G159600.1 | Wheat | cytosol, nucleus, plastid | 94.29 | 94.19 |
| TraesCS4A01G143200.1 | Wheat | plastid | 94.08 | 93.99 |
| TraesCS4B01G162200.1 | Wheat | nucleus | 92.86 | 92.76 |
| Os11t0533500-01 | Rice | nucleus | 78.16 | 78.32 |
| Zm00001d007407_P006 | Maize | cytosol, nucleus, plastid | 65.51 | 73.54 |
| KXG26019 | Sorghum | cytosol | 19.8 | 72.12 |
| OQU83580 | Sorghum | plastid | 63.78 | 72.0 |
| KXG21076 | Sorghum | plastid | 63.67 | 71.23 |
| Zm00001d052666_P014 | Maize | nucleus | 65.92 | 70.07 |
| GSMUA_Achr6P08220_001 | Banana | nucleus | 50.92 | 49.85 |
| VIT_04s0008g02780.t01 | Wine grape | nucleus | 50.1 | 48.81 |
| VIT_14s0068g00840.t01 | Wine grape | cytosol | 29.18 | 48.64 |
| KRH13310 | Soybean | nucleus | 49.39 | 48.16 |
| KRH20664 | Soybean | nucleus | 49.39 | 47.73 |
| KRH63701 | Soybean | nucleus | 48.98 | 47.34 |
| Solyc09g091280.2.1 | Tomato | cytosol | 48.88 | 47.05 |
| AT3G12280.1 | Thale cress | nucleus | 48.57 | 46.99 |
| PGSC0003DMT400030280 | Potato | nucleus | 48.57 | 46.85 |
| CDY50559 | Canola | nucleus | 48.37 | 46.7 |
| CDY52614 | Canola | cytosol | 47.96 | 46.63 |
| Bra038707.1-P | Field mustard | nucleus | 48.37 | 46.52 |
| CDX73827 | Canola | nucleus | 47.86 | 46.39 |
| CDY08440 | Canola | nucleus | 48.06 | 46.36 |
| Bra034764.1-P | Field mustard | nucleus | 47.96 | 46.26 |
| CDY42141 | Canola | cytosol | 47.86 | 46.12 |
| Bra001446.1-P | Field mustard | nucleus | 47.65 | 45.47 |
| HORVU7Hr1G055440.9 | Barley | plastid | 48.57 | 44.74 |
| CDY00765 | Canola | mitochondrion | 47.45 | 41.67 |
| CDY52391 | Canola | nucleus | 6.94 | 29.44 |
Protein Annotations
| Gene3D:1.10.472.10 | Gene3D:1.10.472.140 | MapMan:13.1.2.1 | UniProt:A0A287NV79 | InterPro:Cyclin-like_sf | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006357 |
| GO:GO:0007049 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0051726 |
| EnsemblPlantsGene:HORVU4Hr1G039890 | EnsemblPlants:HORVU4Hr1G039890.2 | PFAM:PF01857 | PFAM:PF01858 | PFAM:PF08934 | PFAM:PF11934 |
| PANTHER:PTHR13742 | PANTHER:PTHR13742:SF22 | InterPro:RBR | InterPro:RB_A | InterPro:RB_B | InterPro:RB_C |
| InterPro:RB_N | InterPro:RB_fam | SMART:SM01367 | SMART:SM01368 | SUPFAM:SSF47954 | UniParc:UPI000B4695E4 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chrchr4H:+:307000173..307025848
Molecular Weight (calculated)
108757.0 Da
IEP (calculated)
7.489
GRAVY (calculated)
-0.201
Length
980 amino acids
Sequence
(BLAST)
(BLAST)
001: MEPQPPPPPA VETHFADLCK ELGVDEGVAS EAAALLEEGK GVFLTPPLFG SKSPEDVERL CFAFVLYCVA KLKGKGMKEE SSRVRLWKIL EGCKLNYNDF
101: FKGSQQLLSK LDHVLRSRYG TDWEDLLELK QLQSLVNLLA DASRFYCKAF NELFLSASTG QEPGSTTSNP DFFCFGWLFF LALRSKSPEL FKDLVSCIHG
201: LVAILAILLI HVPAKFRSFT IEGSSHLIKQ TVRGVDLLAS LCHNYHTSEN RLKEMMGKFH KAIEEFFSTK AVRASECKTE TSGKIDTDGL IYFRDLLDKE
301: CFHSNFEKLE KLTTTTSWEG ELDLEMFLVN NGNIISAENS SRDFSNLSCP KRVFETLASP AKTIKNMLTV PSSPSSPANG GSVKVVQMTP VTSAMTTAKW
401: LHEVISSLPE KPSTKLEKFL SSCDTDLTSD VTKRVSIILE AIFPTKPSGH CGGSMGLNCT NAFDIPWAEA RKMEASKLYY RVLEAVCRAE SLNTNVNNLT
501: PLLSNERFHR CLIACSAELV LATHKTVIMM FPAVLESTGL TAFDLSKIIE NFVRHEESLP RELKRHLNSL EEQLLESMAW EKGSSLYNSL IVARPSLASE
601: INRLGLLAES MLSLDDIVAR QNFHAEDLPA TPSKKQAADP DENGDTRSPK RLCIESRSTL VDQIPQTPSA KQSYTLKAKW CPLQSTFASP TVSNPVGRNE
701: KCAEVGVHIF FSKILKLAAI RIRNLCERLG HVEQTERVYN IFKQILDQQT ALFFNRHIDQ LILCSLYGVA KVSQLTLTFK EIVNNYKREQ QCMPEVFRSV
801: FVVNTDHNGG LGSRHVDIII FYNEVFVPAV KPFLVALIPS GAHPDNKKNH NSQIPGSPKS SPFSNLPDMS PKKVSSSHNV YISPLRQTKK DALLSPSSRS
901: FYACIGESTH AYQSSSEDLA AINNCLNYTT RRINTRINFD MVSDSVVAGS LGQPNGVPAS SDPAGSFSFL SRKGNPGPDS
101: FKGSQQLLSK LDHVLRSRYG TDWEDLLELK QLQSLVNLLA DASRFYCKAF NELFLSASTG QEPGSTTSNP DFFCFGWLFF LALRSKSPEL FKDLVSCIHG
201: LVAILAILLI HVPAKFRSFT IEGSSHLIKQ TVRGVDLLAS LCHNYHTSEN RLKEMMGKFH KAIEEFFSTK AVRASECKTE TSGKIDTDGL IYFRDLLDKE
301: CFHSNFEKLE KLTTTTSWEG ELDLEMFLVN NGNIISAENS SRDFSNLSCP KRVFETLASP AKTIKNMLTV PSSPSSPANG GSVKVVQMTP VTSAMTTAKW
401: LHEVISSLPE KPSTKLEKFL SSCDTDLTSD VTKRVSIILE AIFPTKPSGH CGGSMGLNCT NAFDIPWAEA RKMEASKLYY RVLEAVCRAE SLNTNVNNLT
501: PLLSNERFHR CLIACSAELV LATHKTVIMM FPAVLESTGL TAFDLSKIIE NFVRHEESLP RELKRHLNSL EEQLLESMAW EKGSSLYNSL IVARPSLASE
601: INRLGLLAES MLSLDDIVAR QNFHAEDLPA TPSKKQAADP DENGDTRSPK RLCIESRSTL VDQIPQTPSA KQSYTLKAKW CPLQSTFASP TVSNPVGRNE
701: KCAEVGVHIF FSKILKLAAI RIRNLCERLG HVEQTERVYN IFKQILDQQT ALFFNRHIDQ LILCSLYGVA KVSQLTLTFK EIVNNYKREQ QCMPEVFRSV
801: FVVNTDHNGG LGSRHVDIII FYNEVFVPAV KPFLVALIPS GAHPDNKKNH NSQIPGSPKS SPFSNLPDMS PKKVSSSHNV YISPLRQTKK DALLSPSSRS
901: FYACIGESTH AYQSSSEDLA AINNCLNYTT RRINTRINFD MVSDSVVAGS LGQPNGVPAS SDPAGSFSFL SRKGNPGPDS
0001: MEEVQPPVTP PIEPNGKRSE ASLLDICEKV LSLDGSTCDE ALKLFTETKR ILSASMSNIG SGTREEVERF WFAFILYSVK RLSVRKEADG LSVSGDNEFN
0101: LCQILRALKL NIVDFFKELP QFVVKAGSVL GELYGADWEN RLQAKEVQAN FVHLSLLSKY YKRGFREFFL TYDANAEKNS ANSSTYLLDS YRFGWLLFLA
0201: LRNHAFSRFK DLVTCSNGVV SILAILIIHV PCRFRNFSIQ DSSRFVKKGD KGVDLVASLC KIYDASEDEL RIVIDKANNL VETILKKKPS PASECQTDKL
0301: DNIDPDGLTY FEDLLEETSI STSLITLEKD YYDGKGELDE RVFINEEDSL LGSGSLSAGA VNITGVKRKI DALSSPARTF ISPLSPHKSP AAKTNGISGA
0401: TKLAATPVST AMTTAKWLRT VISPLLPKPS PGLEHFLKSC DRDITNDVTR RAHIILEAIF PNSSLGAQCG GGSLQAVDLM DDIWAEQRRL EACKLYYRVL
0501: EAMCKAEAQI LHANNLNSLL TNERFHRCML ACSAELVLAT HKTITMLFPA VLERTGITAF DLSKVIESFI RHEDSLPREL RRHLNSLEER LLESMVWEKG
0601: SSMYNSLIVA RPSLALEINQ LGLLAEPMPS LDAIAALINF SDGANHASSV QKHETCPGQN GGIRSPKRLC TDYRSILVER NSFTSPVKDR LLALGNVKSK
0701: MLPPPLQSAF ASPTRPNPGG GGETCAETGI NIFFTKINKL AAVRINGMVE RLQLSQQIRE SVYCFFQHVL AQRTSLLFSR HIDQIILCCF YGVAKISQMS
0801: LTFREIIYNY RKQPQCKPLV FRSVYVDALQ CRRQGRIGPD HVDIITFYNE IFIPAVKPLL VELGPVRNDR AVEANNKPEG QCPGSPKVSV FPSVPDMSPK
0901: KVSAVHNVYV SPLRGSKMDA LISHSTKSYY ACVGESTHAY QSPSKDLSAI NNRLNNSSSN RKRTLNFDAE AGMVSDSMVA NSLNLQNQNQ NQNGSDASSS
1001: GGAAPLKTEP TDS
0101: LCQILRALKL NIVDFFKELP QFVVKAGSVL GELYGADWEN RLQAKEVQAN FVHLSLLSKY YKRGFREFFL TYDANAEKNS ANSSTYLLDS YRFGWLLFLA
0201: LRNHAFSRFK DLVTCSNGVV SILAILIIHV PCRFRNFSIQ DSSRFVKKGD KGVDLVASLC KIYDASEDEL RIVIDKANNL VETILKKKPS PASECQTDKL
0301: DNIDPDGLTY FEDLLEETSI STSLITLEKD YYDGKGELDE RVFINEEDSL LGSGSLSAGA VNITGVKRKI DALSSPARTF ISPLSPHKSP AAKTNGISGA
0401: TKLAATPVST AMTTAKWLRT VISPLLPKPS PGLEHFLKSC DRDITNDVTR RAHIILEAIF PNSSLGAQCG GGSLQAVDLM DDIWAEQRRL EACKLYYRVL
0501: EAMCKAEAQI LHANNLNSLL TNERFHRCML ACSAELVLAT HKTITMLFPA VLERTGITAF DLSKVIESFI RHEDSLPREL RRHLNSLEER LLESMVWEKG
0601: SSMYNSLIVA RPSLALEINQ LGLLAEPMPS LDAIAALINF SDGANHASSV QKHETCPGQN GGIRSPKRLC TDYRSILVER NSFTSPVKDR LLALGNVKSK
0701: MLPPPLQSAF ASPTRPNPGG GGETCAETGI NIFFTKINKL AAVRINGMVE RLQLSQQIRE SVYCFFQHVL AQRTSLLFSR HIDQIILCCF YGVAKISQMS
0801: LTFREIIYNY RKQPQCKPLV FRSVYVDALQ CRRQGRIGPD HVDIITFYNE IFIPAVKPLL VELGPVRNDR AVEANNKPEG QCPGSPKVSV FPSVPDMSPK
0901: KVSAVHNVYV SPLRGSKMDA LISHSTKSYY ACVGESTHAY QSPSKDLSAI NNRLNNSSSN RKRTLNFDAE AGMVSDSMVA NSLNLQNQNQ NQNGSDASSS
1001: GGAAPLKTEP TDS
Arabidopsis Description
RBR1RBR1 [Source:UniProtKB/TrEMBL;Acc:A0A178VFS5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.