Factsheet for Zm00001d007407_P006

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, nucleus, plastid

Predictor Summary:

plastid 2
nucleus 1
extracellular 1
golgi 1
plasma membrane 1
endoplasmic reticulum 1
vacuole 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid, secretory
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d003439_P001	nucleus
Zm00001d004512_P001	nucleus
Zm00001d005293_P001	nucleus, nucleus
Zm00001d009715_P001	nucleus
Zm00001d013728_P001	nucleus
Zm00001d019696_P001	nucleus, nucleus
Zm00001d020353_P001	nucleus
Zm00001d024698_P002
Zm00001d028092_P001	nucleus
Zm00001d030894_P002	nucleus
Zm00001d033330_P001	nucleus
Zm00001d041345_P001	nucleus
Zm00001d048143_P003	nucleus
Zm00001d049608_P001
Zm00001d052977_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G12280.1	Zm00001d004512_P001	AT1G47870.1	20407024
AT3G12280.1	Zm00001d004512_P001	AT1G47870.1	20706207
AT3G12280.1	Zm00001d020353_P001	AT1G70210.1	20407024
AT3G12280.1	Zm00001d024698_P002	AT3G20740.1	15221456
AT3G12280.1	Zm00001d049608_P001	AT3G20740.1	15221456
AT3G12280.1	Zm00001d024698_P002	AT3G20740.1	18812497
AT3G12280.1	Zm00001d049608_P001	AT3G20740.1	18812497
AT3G12280.1	Zm00001d009715_P001	AT3G24140.1	24571519
AT3G12280.1	Zm00001d005293_P001	AT3G50070.1	20407024
AT3G12280.1	Zm00001d019696_P001	AT3G50070.1	20407024
AT3G12280.1	Zm00001d052977_P001	AT3G55760.1	20706207
AT3G12280.1	Zm00001d005293_P001	AT4G34160.1	20407024
AT3G12280.1	Zm00001d019696_P001	AT4G34160.1	20407024
AT3G12280.1	Zm00001d003439_P001	AT4G37630.1	20407024
AT3G12280.1	Zm00001d013728_P001	AT4G37630.1	20407024
AT3G12280.1	Zm00001d028092_P001	AT4G37630.1	20407024
AT3G12280.1	Zm00001d030894_P002	AT4G37630.1	20407024
AT3G12280.1	Zm00001d033330_P001	AT4G37630.1	20407024
AT3G12280.1	Zm00001d041345_P001	AT4G37630.1	20407024
AT3G12280.1	Zm00001d048143_P003	AT4G37630.1	20407024

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU83580	Sorghum	plastid	86.94	87.44
KXG26019	Sorghum	cytosol	26.92	87.36
KXG21076	Sorghum	plastid	87.63	87.33
Zm00001d052666_P014	Maize	nucleus	89.81	85.03
Os11t0533500-01	Rice	nucleus	75.49	67.38
TraesCS4A01G143200.1	Wheat	plastid	74.57	66.36
TraesCS4D01G159600.1	Wheat	cytosol, nucleus, plastid	74.34	66.16
HORVU4Hr1G039890.2	Barley	cytosol, nucleus, plastid	73.54	65.51
TraesCS4B01G162200.1	Wheat	nucleus	73.54	65.44
VIT_14s0068g00840.t01	Wine grape	cytosol	31.96	47.45
GSMUA_Achr6P08220_001	Banana	nucleus	51.78	45.15
KRH13310	Soybean	nucleus	50.63	43.98
VIT_04s0008g02780.t01	Wine grape	nucleus	50.63	43.94
Zm00001d052695_P016	Maize	nucleus	50.4	43.69
KRH20664	Soybean	nucleus	50.74	43.69
Zm00001d031678_P003	Maize	cytosol, nucleus, plastid	50.97	43.5
KRH63701	Soybean	nucleus	50.17	43.2
AT3G12280.1	Thale cress	nucleus	48.8	42.05
PGSC0003DMT400030280	Potato	nucleus	48.8	41.93
CDY08440	Canola	nucleus	48.8	41.93
Bra034764.1-P	Field mustard	nucleus	48.8	41.93
Solyc09g091280.2.1	Tomato	cytosol	48.8	41.85
CDY42141	Canola	cytosol	48.45	41.59
CDY50559	Canola	nucleus	48.22	41.48
CDY52614	Canola	cytosol	47.88	41.47
CDX73827	Canola	nucleus	47.88	41.35
Bra038707.1-P	Field mustard	nucleus	48.22	41.31
Bra001446.1-P	Field mustard	nucleus	47.77	40.6
CDY00765	Canola	mitochondrion	47.42	37.1
CDY52391	Canola	nucleus	7.1	26.84

Protein Annotations

Gene3D:1.10.472.10	MapMan:13.1.2.1	EntrezGene:541651	UniProt:A0A1D6F666	InterPro:Cyclin-like_sf	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006357
GO:GO:0007049	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0051726
ProteinID:ONM26756.1	ProteinID:ONM26771.1	ProteinID:ONM26772.1	ProteinID:ONM26784.1	PFAM:PF01857	PFAM:PF01858
PFAM:PF11934	PANTHER:PTHR13742	PANTHER:PTHR13742:SF22	InterPro:RBR	InterPro:RB_A	InterPro:RB_B
InterPro:RB_N	InterPro:RB_fam	SMART:SM01368	SUPFAM:SSF47954	UniParc:UPI00084542D1	EnsemblPlantsGene:Zm00001d007407
EnsemblPlants:Zm00001d007407_P006	EnsemblPlants:Zm00001d007407_T006	SEG:seg	:	:	:

Description

related to retinoblastoma1Retinoblastoma-related protein 1

Coordinates

chr2:-:231036637..231047416

Molecular Weight (calculated)

96901.3 Da

IEP (calculated)

7.979

GRAVY (calculated)

-0.237

Length

873 amino acids

Sequence
(BLAST)

001: MSSLDPSPAT STQQKQLESL VNLLTQGSRF YRKAYNELFS GVTTEQDPDS STNIPEYMLF GWHLFLMLHL RSPELFKDLV SCIHGLVAVL AILLIHVPAK
101: FRSFTIEGSS HLIKQTEKGV DLIASLCHNY HTSEERLKEM LHKSHNAIED IFHMKALSAS ECKPENLDKI DTGMEPFLTY DLMYFKGLID MECFQSNLEK
201: MEKLCNSNSC KGELDFKSIL INNDYIPYDE NSTGDSTNLG HSKCAFETLA SPTKTIKNML TVPSSPLSPA TGGSVKIVQM TPVTSAMTTA KWLREVISSL
301: PDKPSSKLQQ FLSSCDRDLT NAVTERVSIV LEAIFPTKSS ANRGVSLGLN CANAFDIPWA EARKVEASKL YYRVLEAICR AELQNSNVNN LTPLLSNERF
401: HRCLIACSAD LVLATHKTVI MMFPAVLEST GLTAFDLSKI IENFVRHEET LPRELKRHLN SLEEQLLESM AWEKGSSLYN SLIVARPSVA SEINRLGLLA
501: EPMPSLDDLV SRQNVRIEGL PATPSKKRAA GPDDNADPRS PKRSCNESRN TVVERNLQTP PPKQSHMVST SLKAKCHPLQ STFASPTVCN PVGGNEKCAD
601: VTIHIFFSKI LKLAAIRIRN LCERVQCVEQ TERVYNVFKQ ILEQQTTLFF NRHIDQLILC CLYGVAKVCQ LELTFREILN NYKREAQCKP EVFSSIYIGS
701: TNRNGVLVSR HVGIITFYNE VFVPAAKPFL VSLISSGTHP EDKKNASGQI PGSPKPSPFP NLPDMSPKKV SASHNVYVSP LRQTKLDLLL SPSSRSFYAC
801: IGEGTHAYQS PSKDLAAINS RLNYNGRKVN SRLNFDMVSD SVVAGSLGQI NGGSTSDPAA AFSPLSKKRE TDT

Best Arabidopsis Sequence Match ( AT3G12280.1 )
(BLAST)

0001: MEEVQPPVTP PIEPNGKRSE ASLLDICEKV LSLDGSTCDE ALKLFTETKR ILSASMSNIG SGTREEVERF WFAFILYSVK RLSVRKEADG LSVSGDNEFN
0101: LCQILRALKL NIVDFFKELP QFVVKAGSVL GELYGADWEN RLQAKEVQAN FVHLSLLSKY YKRGFREFFL TYDANAEKNS ANSSTYLLDS YRFGWLLFLA
0201: LRNHAFSRFK DLVTCSNGVV SILAILIIHV PCRFRNFSIQ DSSRFVKKGD KGVDLVASLC KIYDASEDEL RIVIDKANNL VETILKKKPS PASECQTDKL
0301: DNIDPDGLTY FEDLLEETSI STSLITLEKD YYDGKGELDE RVFINEEDSL LGSGSLSAGA VNITGVKRKI DALSSPARTF ISPLSPHKSP AAKTNGISGA
0401: TKLAATPVST AMTTAKWLRT VISPLLPKPS PGLEHFLKSC DRDITNDVTR RAHIILEAIF PNSSLGAQCG GGSLQAVDLM DDIWAEQRRL EACKLYYRVL
0501: EAMCKAEAQI LHANNLNSLL TNERFHRCML ACSAELVLAT HKTITMLFPA VLERTGITAF DLSKVIESFI RHEDSLPREL RRHLNSLEER LLESMVWEKG
0601: SSMYNSLIVA RPSLALEINQ LGLLAEPMPS LDAIAALINF SDGANHASSV QKHETCPGQN GGIRSPKRLC TDYRSILVER NSFTSPVKDR LLALGNVKSK
0701: MLPPPLQSAF ASPTRPNPGG GGETCAETGI NIFFTKINKL AAVRINGMVE RLQLSQQIRE SVYCFFQHVL AQRTSLLFSR HIDQIILCCF YGVAKISQMS
0801: LTFREIIYNY RKQPQCKPLV FRSVYVDALQ CRRQGRIGPD HVDIITFYNE IFIPAVKPLL VELGPVRNDR AVEANNKPEG QCPGSPKVSV FPSVPDMSPK
0901: KVSAVHNVYV SPLRGSKMDA LISHSTKSYY ACVGESTHAY QSPSKDLSAI NNRLNNSSSN RKRTLNFDAE AGMVSDSMVA NSLNLQNQNQ NQNGSDASSS
1001: GGAAPLKTEP TDS

Arabidopsis Description

RBR1RBR1 [Source:UniProtKB/TrEMBL;Acc:A0A178VFS5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.