Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- cytoskeleton 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os08t0137100-01 | Rice | cytosol | 87.86 | 88.56 |
| GSMUA_Achr5P26370_001 | Banana | cytosol | 79.68 | 82.07 |
| VIT_19s0014g05210.t01 | Wine grape | plastid | 77.31 | 79.19 |
| OQU79846 | Sorghum | plastid | 98.94 | 76.22 |
| TraesCS7A01G089100.1 | Wheat | cytosol | 74.93 | 74.93 |
| Solyc07g064090.2.1 | Tomato | nucleus | 73.35 | 74.73 |
| PGSC0003DMT400049479 | Potato | cytosol | 73.35 | 74.73 |
| KRH31935 | Soybean | cytosol | 75.2 | 74.61 |
| TraesCS4A01G388400.1 | Wheat | cytosol, plastid | 74.41 | 74.6 |
| KRH71526 | Soybean | cytosol | 74.93 | 74.54 |
| AT3G20740.1 | Thale cress | cytosol | 67.02 | 68.83 |
| CDY53612 | Canola | plastid | 66.75 | 68.56 |
| CDY27567 | Canola | plastid | 66.49 | 68.29 |
| KRH22237 | Soybean | cytosol | 68.6 | 67.53 |
| TraesCS7A01G308300.1 | Wheat | nucleus, plastid | 84.17 | 67.44 |
| HORVU7Hr1G073410.1 | Barley | cytosol | 84.43 | 67.23 |
| KRH27099 | Soybean | cytosol, mitochondrion, nucleus | 39.58 | 66.67 |
| TraesCS7D01G305100.1 | Wheat | nucleus, plastid | 84.43 | 65.98 |
| TraesCS7A01G089200.1 | Wheat | cytoskeleton, cytosol, nucleus, plastid | 73.61 | 61.32 |
| TraesCS7D01G084500.1 | Wheat | plastid | 73.61 | 61.32 |
| CDY19607 | Canola | cytosol, nucleus, plastid | 62.8 | 60.41 |
| Zm00001d049608_P001 | Maize | mitochondrion | 72.82 | 59.87 |
| CDY19611 | Canola | plastid | 59.89 | 59.74 |
| CDY06378 | Canola | mitochondrion | 42.22 | 59.48 |
| Os08t0137250-01 | Rice | cytosol | 72.03 | 58.58 |
| CDY56255 | Canola | cytosol | 59.63 | 57.51 |
| CDY68274 | Canola | cytosol, nucleus | 29.55 | 54.9 |
| CDY19610 | Canola | cytoskeleton, cytosol, nucleus | 38.79 | 49.33 |
| Bra041121.1-P | Field mustard | cytosol | 7.39 | 39.44 |
| CDY10986 | Canola | extracellular | 11.87 | 21.84 |
Protein Annotations
| MapMan:12.3.3.1.1.2 | Gene3D:2.130.10.10 | EntrezGene:542076 | ProteinID:AQK41748.1 | EMBL:AY061965 | EMBL:AY150644 |
| EMBL:BT062314 | UniProt:C0HJ08 | InterPro:G-protein_beta_WD-40_rep | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005654 | GO:GO:0006139 |
| GO:GO:0006325 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0016571 | GO:GO:0019538 | GO:GO:0035098 |
| InterPro:IPR001680 | InterPro:IPR015943 | InterPro:IPR017986 | PFAM:PF00400 | PRINTS:PR00320 | ScanProsite:PS00678 |
| PFscan:PS50082 | PFscan:PS50294 | PANTHER:PTHR10253 | PANTHER:PTHR10253:SF5 | InterPro:Polycomb_EED | UniProt:Q8VZY6 |
| SMART:SM00320 | SUPFAM:SSF50978 | UniParc:UPI0000005161 | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat | InterPro:WD40_repeat_CS |
| InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf | EnsemblPlantsGene:Zm00001d024698 | EnsemblPlants:Zm00001d024698_P002 | EnsemblPlants:Zm00001d024698_T002 | : |
Description
fertilization independent endosperm2Polycomb group protein FIE2
Coordinates
chr10:-:83962196..83966341
Molecular Weight (calculated)
42504.3 Da
IEP (calculated)
6.243
GRAVY (calculated)
-0.259
Length
379 amino acids
Sequence
(BLAST)
(BLAST)
001: MAKLGPGQGL GCEAAEGSLV PSRKREYKPC GKHTEGKRPL YAIGFNFMDA RYYDVFATVG GNRVTTYRCL ENGSFALLQA YVDEDKDESF YTLSWARDHV
101: DGSPLLVAAG SNGIIRVINC ATEKLAKSFV GHGDSINEIR TQPLKPSLII SASKDESVRL WNVHTGICIL IFAGAGGHRN EVLSVDFHPS DIERFASCGM
201: DNTVKIWSMK EFWLYVDKSY SWTDLPSKFP TKYVQFPVLI AAVHSNYVDC TRWLGDFILS KSVDNEIVLW EPKTKEQSPG EGSIDILQKY PVPECDIWFI
301: KFSCDFHFNQ LAIGNREGKI YVWEVQSSPP VLIARLYNQQ CKSPIRQTAV SFDGSTILGA GEDGTIWRWD EVDHPSSRN
101: DGSPLLVAAG SNGIIRVINC ATEKLAKSFV GHGDSINEIR TQPLKPSLII SASKDESVRL WNVHTGICIL IFAGAGGHRN EVLSVDFHPS DIERFASCGM
201: DNTVKIWSMK EFWLYVDKSY SWTDLPSKFP TKYVQFPVLI AAVHSNYVDC TRWLGDFILS KSVDNEIVLW EPKTKEQSPG EGSIDILQKY PVPECDIWFI
301: KFSCDFHFNQ LAIGNREGKI YVWEVQSSPP VLIARLYNQQ CKSPIRQTAV SFDGSTILGA GEDGTIWRWD EVDHPSSRN
001: MSKITLGNES IVGSLTPSNK KSYKVTNRIQ EGKKPLYAVV FNFLDARFFD VFVTAGGNRI TLYNCLGDGA ISALQSYADE DKEESFYTVS WACGVNGNPY
101: VAAGGVKGII RVIDVNSETI HKSLVGHGDS VNEIRTQPLK PQLVITASKD ESVRLWNVET GICILIFAGA GGHRYEVLSV DFHPSDIYRF ASCGMDTTIK
201: IWSMKEFWTY VEKSFTWTDD PSKFPTKFVQ FPVFTASIHT NYVDCNRWFG DFILSKSVDN EILLWEPQLK ENSPGEGASD VLLRYPVPMC DIWFIKFSCD
301: LHLSSVAIGN QEGKVYVWDL KSCPPVLITK LSHNQSKSVI RQTAMSVDGS TILACCEDGT IWRWDVITK
101: VAAGGVKGII RVIDVNSETI HKSLVGHGDS VNEIRTQPLK PQLVITASKD ESVRLWNVET GICILIFAGA GGHRYEVLSV DFHPSDIYRF ASCGMDTTIK
201: IWSMKEFWTY VEKSFTWTDD PSKFPTKFVQ FPVFTASIHT NYVDCNRWFG DFILSKSVDN EILLWEPQLK ENSPGEGASD VLLRYPVPMC DIWFIKFSCD
301: LHLSSVAIGN QEGKVYVWDL KSCPPVLITK LSHNQSKSVI RQTAMSVDGS TILACCEDGT IWRWDVITK
Arabidopsis Description
FIEPolycomb group protein FERTILIZATION-INDEPENDENT ENDOSPERM [Source:UniProtKB/Swiss-Prot;Acc:Q9LT47]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.