Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- mitochondrion 4
- cytosol 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES13318 | Sorghum | mitochondrion | 72.89 | 74.83 |
| Zm00001d024698_P002 | Maize | cytosol | 59.87 | 72.82 |
| Os08t0137100-01 | Rice | cytosol | 55.31 | 67.82 |
| TraesCS4A01G388400.1 | Wheat | cytosol, plastid | 54.45 | 66.4 |
| TraesCS7A01G089100.1 | Wheat | cytosol | 53.58 | 65.17 |
| GSMUA_Achr5P26370_001 | Banana | cytosol | 51.84 | 64.95 |
| VIT_19s0014g05210.t01 | Wine grape | plastid | 50.76 | 63.24 |
| Solyc07g064090.2.1 | Tomato | nucleus | 48.81 | 60.48 |
| PGSC0003DMT400049479 | Potato | cytosol | 48.59 | 60.22 |
| KRH71526 | Soybean | cytosol | 49.24 | 59.58 |
| KRH31935 | Soybean | cytosol | 49.24 | 59.42 |
| CDY53612 | Canola | plastid | 45.99 | 57.45 |
| TraesCS7D01G084500.1 | Wheat | plastid | 56.62 | 57.36 |
| TraesCS7A01G089200.1 | Wheat | cytoskeleton, cytosol, nucleus, plastid | 56.18 | 56.92 |
| CDY27567 | Canola | plastid | 45.55 | 56.91 |
| KRH22237 | Soybean | cytosol | 47.07 | 56.36 |
| AT3G20740.1 | Thale cress | cytosol | 44.9 | 56.1 |
| Os08t0137250-01 | Rice | cytosol | 56.18 | 55.58 |
| KRH27099 | Soybean | cytosol, mitochondrion, nucleus | 27.11 | 55.56 |
| TraesCS7A01G308300.1 | Wheat | nucleus, plastid | 56.4 | 54.97 |
| TraesCS7D01G305100.1 | Wheat | nucleus, plastid | 55.75 | 52.99 |
| HORVU7Hr1G073410.1 | Barley | cytosol | 54.45 | 52.73 |
| CDY19611 | Canola | plastid | 42.95 | 52.11 |
| CDY06378 | Canola | mitochondrion | 30.15 | 51.67 |
| CDY68274 | Canola | cytosol, nucleus | 22.78 | 51.47 |
| CDY19607 | Canola | cytosol, nucleus, plastid | 43.38 | 50.76 |
| CDY56255 | Canola | cytosol | 42.73 | 50.13 |
| CDY19610 | Canola | cytoskeleton, cytosol, nucleus | 28.42 | 43.96 |
| Bra041121.1-P | Field mustard | cytosol | 5.21 | 33.8 |
| CDY10986 | Canola | extracellular | 8.68 | 19.42 |
Protein Annotations
| MapMan:12.3.3.1.1.2 | Gene3D:2.130.10.10 | EntrezGene:542075 | ProteinID:AAO26659.1 | ProteinID:AAT39462.1 | ProteinID:AQK50903.1 |
| EMBL:AY061964 | EMBL:BT062211 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005654 | GO:GO:0006139 | GO:GO:0006325 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0006464 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0016571 | GO:GO:0019538 | GO:GO:0035098 |
| InterPro:IPR001680 | InterPro:IPR015943 | InterPro:IPR017986 | PFAM:PF00400 | ScanProsite:PS00678 | PFscan:PS50082 |
| PFscan:PS50294 | PANTHER:PTHR10253 | PANTHER:PTHR10253:SF5 | InterPro:Polycomb_EED | UniProt:Q6J9W1 | UniProt:Q8VZY7 |
| SMART:SM00320 | SUPFAM:SSF50978 | UniParc:UPI000003843C | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat | InterPro:WD40_repeat_CS |
| InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf | EnsemblPlantsGene:Zm00001d049608 | EnsemblPlants:Zm00001d049608_P001 | EnsemblPlants:Zm00001d049608_T001 | SEG:seg |
Description
fertilization independent endosperm1Polycomb group protein FIE1
Coordinates
chr4:-:37421922..37427789
Molecular Weight (calculated)
50576.0 Da
IEP (calculated)
7.015
GRAVY (calculated)
-0.263
Length
461 amino acids
Sequence
(BLAST)
(BLAST)
001: MPPSKARRKR SLRDITATVA TGTVANSKPG SSSTNEGKQQ DKKKEGPQEP DIPPLPPVVV NIVPRQGLGC EVVEGLLVPS RKREYKPNSK YTVGNHPIYA
101: IGFNFIDMRY YDVFAIASCN SVIIYRCLEN GGFGLLQNYV DEDKDESFYT LSWTIDQVDS SPLLVAAGSN RIIRVINCAT EKLDKSLVGH GGSIHEIRTH
201: ASKPSLIISA SKDESIRLWN VHTGICILVF AGAGGHRHDV LSVDFHPTEV GIFASCGMDN TVKIWSMKEF WIYVEKSYSW TGHPSKFPTR NIQFPVLTAA
301: VHSDYVDCTR WLGDFILSKS VKNAVLLWEP KPDKRRPGEG SVDVLQKYPV PKCSLWFMKF SCDFYSNQMA IGNNKGEIYV WEVQSSPPVL IDRLCNQECK
401: SPIRQTAVSF DGSTILGAAD DGAIWRWDEV DPAASSSKPD QAAAPAAGVG AGAGADADAD A
101: IGFNFIDMRY YDVFAIASCN SVIIYRCLEN GGFGLLQNYV DEDKDESFYT LSWTIDQVDS SPLLVAAGSN RIIRVINCAT EKLDKSLVGH GGSIHEIRTH
201: ASKPSLIISA SKDESIRLWN VHTGICILVF AGAGGHRHDV LSVDFHPTEV GIFASCGMDN TVKIWSMKEF WIYVEKSYSW TGHPSKFPTR NIQFPVLTAA
301: VHSDYVDCTR WLGDFILSKS VKNAVLLWEP KPDKRRPGEG SVDVLQKYPV PKCSLWFMKF SCDFYSNQMA IGNNKGEIYV WEVQSSPPVL IDRLCNQECK
401: SPIRQTAVSF DGSTILGAAD DGAIWRWDEV DPAASSSKPD QAAAPAAGVG AGAGADADAD A
001: MSKITLGNES IVGSLTPSNK KSYKVTNRIQ EGKKPLYAVV FNFLDARFFD VFVTAGGNRI TLYNCLGDGA ISALQSYADE DKEESFYTVS WACGVNGNPY
101: VAAGGVKGII RVIDVNSETI HKSLVGHGDS VNEIRTQPLK PQLVITASKD ESVRLWNVET GICILIFAGA GGHRYEVLSV DFHPSDIYRF ASCGMDTTIK
201: IWSMKEFWTY VEKSFTWTDD PSKFPTKFVQ FPVFTASIHT NYVDCNRWFG DFILSKSVDN EILLWEPQLK ENSPGEGASD VLLRYPVPMC DIWFIKFSCD
301: LHLSSVAIGN QEGKVYVWDL KSCPPVLITK LSHNQSKSVI RQTAMSVDGS TILACCEDGT IWRWDVITK
101: VAAGGVKGII RVIDVNSETI HKSLVGHGDS VNEIRTQPLK PQLVITASKD ESVRLWNVET GICILIFAGA GGHRYEVLSV DFHPSDIYRF ASCGMDTTIK
201: IWSMKEFWTY VEKSFTWTDD PSKFPTKFVQ FPVFTASIHT NYVDCNRWFG DFILSKSVDN EILLWEPQLK ENSPGEGASD VLLRYPVPMC DIWFIKFSCD
301: LHLSSVAIGN QEGKVYVWDL KSCPPVLITK LSHNQSKSVI RQTAMSVDGS TILACCEDGT IWRWDVITK
Arabidopsis Description
FIEPolycomb group protein FERTILIZATION-INDEPENDENT ENDOSPERM [Source:UniProtKB/Swiss-Prot;Acc:Q9LT47]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.