Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH27099 | Soybean | cytosol, mitochondrion, nucleus | 49.35 | 84.44 |
| KRH71526 | Soybean | cytosol | 80.78 | 81.63 |
| KRH31935 | Soybean | cytosol | 80.26 | 80.89 |
| VIT_19s0014g05210.t01 | Wine grape | plastid | 75.58 | 78.65 |
| GSMUA_Achr5P26370_001 | Banana | cytosol | 74.29 | 77.72 |
| PGSC0003DMT400049479 | Potato | cytosol | 75.06 | 77.69 |
| Solyc07g064090.2.1 | Tomato | nucleus | 74.81 | 77.42 |
| Os08t0137100-01 | Rice | cytosol | 68.31 | 69.95 |
| AT3G20740.1 | Thale cress | cytosol | 67.01 | 69.92 |
| Zm00001d024698_P002 | Maize | cytosol | 67.53 | 68.6 |
| CDY53612 | Canola | plastid | 65.19 | 68.02 |
| CDY27567 | Canola | plastid | 64.94 | 67.75 |
| TraesCS7A01G089100.1 | Wheat | cytosol | 61.04 | 62.01 |
| CDY19611 | Canola | plastid | 60.78 | 61.58 |
| TraesCS4A01G388400.1 | Wheat | cytosol, plastid | 60.0 | 61.11 |
| CDY19607 | Canola | cytosol, nucleus, plastid | 61.56 | 60.15 |
| CDY06378 | Canola | mitochondrion | 41.56 | 59.48 |
| CDY56255 | Canola | cytosol | 59.48 | 58.27 |
| TraesCS7A01G308300.1 | Wheat | nucleus, plastid | 68.31 | 55.6 |
| HORVU7Hr1G073410.1 | Barley | cytosol | 67.53 | 54.62 |
| TraesCS7D01G305100.1 | Wheat | nucleus, plastid | 68.57 | 54.43 |
| CDY68274 | Canola | cytosol, nucleus | 28.83 | 54.41 |
| OQU79846 | Sorghum | plastid | 67.01 | 52.44 |
| TraesCS7A01G089200.1 | Wheat | cytoskeleton, cytosol, nucleus, plastid | 60.78 | 51.43 |
| TraesCS7D01G084500.1 | Wheat | plastid | 59.48 | 50.33 |
| Os08t0137250-01 | Rice | cytosol | 59.74 | 49.36 |
| CDY19610 | Canola | cytoskeleton, cytosol, nucleus | 37.92 | 48.99 |
| EES13318 | Sorghum | mitochondrion | 56.88 | 48.78 |
| Zm00001d049608_P001 | Maize | mitochondrion | 56.36 | 47.07 |
| CDY10986 | Canola | extracellular | 11.95 | 22.33 |
Protein Annotations
| EntrezGene:100785120 | MapMan:12.3.3.1.1.2 | Gene3D:2.130.10.10 | EMBL:ACUP02008397 | InterPro:G-protein_beta_WD-40_rep | EnsemblPlantsGene:GLYMA_13G287200 |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0005654 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 |
| GO:GO:0016043 | GO:GO:0016571 | GO:GO:0019538 | GO:GO:0035098 | UniProt:I1M3I7 | InterPro:IPR001680 |
| InterPro:IPR015943 | InterPro:IPR017986 | EnsemblPlants:KRH22237 | ProteinID:KRH22237 | ProteinID:KRH22237.1 | PFAM:PF00400 |
| PRINTS:PR00320 | ScanProsite:PS00678 | PFscan:PS50082 | PFscan:PS50294 | PANTHER:PTHR10253 | PANTHER:PTHR10253:SF5 |
| InterPro:Polycomb_EED | SMART:SM00320 | SUPFAM:SSF50978 | UniParc:UPI000233BD61 | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat |
| InterPro:WD40_repeat_CS | InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf | : | : | : |
Description
hypothetical protein
Coordinates
chr13:-:38768447..38773216
Molecular Weight (calculated)
42746.9 Da
IEP (calculated)
6.964
GRAVY (calculated)
-0.129
Length
385 amino acids
Sequence
(BLAST)
(BLAST)
001: MVTRVEKGGK SFGLGCDPVV GSLIPAKKKD YKVTNRLQEG KRPLYAIVFN TIDFRYRDIF ATVGGNKVTV YQCLDEGDIA VLQSYADEDK NESFYTVGWA
101: CNVDGTPLVV AGGLNGVIRV IDAGSEKIHK SFVGHGDSIN EVKAQILNPS LVVSASKDES IRLWNAHTGI CILIFAGGGG HRNEVLSVDF HPSDMYRICS
201: CGMDSTVKIW SMKEFWTYVE KSSTWTDLPS KFPTKFVQFP VYTASVHINY VDCNRWLGDF ILSKSVDNEI ILWEPKVNEQ TPGKGVVDVL HKYPIPDCNI
301: WFIKFSCDFH FNIVTVGNRE GKIFVWELQS SPPVLAAKLS HPQSKSPIRQ TATSFDGSTI LSCCEDGTIW RWDVSKPSTS TSTAA
101: CNVDGTPLVV AGGLNGVIRV IDAGSEKIHK SFVGHGDSIN EVKAQILNPS LVVSASKDES IRLWNAHTGI CILIFAGGGG HRNEVLSVDF HPSDMYRICS
201: CGMDSTVKIW SMKEFWTYVE KSSTWTDLPS KFPTKFVQFP VYTASVHINY VDCNRWLGDF ILSKSVDNEI ILWEPKVNEQ TPGKGVVDVL HKYPIPDCNI
301: WFIKFSCDFH FNIVTVGNRE GKIFVWELQS SPPVLAAKLS HPQSKSPIRQ TATSFDGSTI LSCCEDGTIW RWDVSKPSTS TSTAA
001: MSKITLGNES IVGSLTPSNK KSYKVTNRIQ EGKKPLYAVV FNFLDARFFD VFVTAGGNRI TLYNCLGDGA ISALQSYADE DKEESFYTVS WACGVNGNPY
101: VAAGGVKGII RVIDVNSETI HKSLVGHGDS VNEIRTQPLK PQLVITASKD ESVRLWNVET GICILIFAGA GGHRYEVLSV DFHPSDIYRF ASCGMDTTIK
201: IWSMKEFWTY VEKSFTWTDD PSKFPTKFVQ FPVFTASIHT NYVDCNRWFG DFILSKSVDN EILLWEPQLK ENSPGEGASD VLLRYPVPMC DIWFIKFSCD
301: LHLSSVAIGN QEGKVYVWDL KSCPPVLITK LSHNQSKSVI RQTAMSVDGS TILACCEDGT IWRWDVITK
101: VAAGGVKGII RVIDVNSETI HKSLVGHGDS VNEIRTQPLK PQLVITASKD ESVRLWNVET GICILIFAGA GGHRYEVLSV DFHPSDIYRF ASCGMDTTIK
201: IWSMKEFWTY VEKSFTWTDD PSKFPTKFVQ FPVFTASIHT NYVDCNRWFG DFILSKSVDN EILLWEPQLK ENSPGEGASD VLLRYPVPMC DIWFIKFSCD
301: LHLSSVAIGN QEGKVYVWDL KSCPPVLITK LSHNQSKSVI RQTAMSVDGS TILACCEDGT IWRWDVITK
Arabidopsis Description
FIEPolycomb group protein FERTILIZATION-INDEPENDENT ENDOSPERM [Source:UniProtKB/Swiss-Prot;Acc:Q9LT47]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.