Factsheet for VIT_19s0014g05210.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_04s0008g02780.t01
VIT_07s0005g01490.t01
VIT_07s0031g00320.t01
VIT_16s0013g01550.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G20740.1	VIT_07s0031g00320.t01	AT2G23380.1	14871310
AT3G20740.1	VIT_07s0031g00320.t01	AT2G23380.1	15456723
AT3G20740.1	VIT_07s0031g00320.t01	AT2G23380.1	18812497
AT3G20740.1	VIT_04s0008g02780.t01	AT3G12280.1	15221456
AT3G20740.1	VIT_04s0008g02780.t01	AT3G12280.1	18812497
AT3G20740.1	VIT_07s0005g01490.t01	AT4G02020.1	15456723
AT3G20740.1	VIT_16s0013g01550.t01	AT5G58230.1	12970192
AT3G20740.1	VIT_16s0013g01550.t01	AT5G58230.1	18812497

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P26370_001	Banana	cytosol	86.76	87.23
PGSC0003DMT400049479	Potato	cytosol	87.3	86.83
Solyc07g064090.2.1	Tomato	nucleus	87.03	86.56
KRH31935	Soybean	cytosol	88.11	85.34
KRH71526	Soybean	cytosol	87.84	85.3
Os08t0137100-01	Rice	cytosol	79.46	78.19
Zm00001d024698_P002	Maize	cytosol	79.19	77.31
KRH22237	Soybean	cytosol	78.65	75.58
AT3G20740.1	Thale cress	cytosol	74.05	74.25
CDY53612	Canola	plastid	73.78	73.98
CDY27567	Canola	plastid	73.51	73.71
TraesCS7A01G089100.1	Wheat	cytosol	67.3	65.7
TraesCS4A01G388400.1	Wheat	cytosol, plastid	66.76	65.34
CDY06378	Canola	mitochondrion	47.03	64.68
CDY19607	Canola	cytosol, nucleus, plastid	68.38	64.21
CDY19611	Canola	plastid	65.68	63.95
CDY56255	Canola	cytosol	65.14	61.32
OQU79846	Sorghum	plastid	79.19	59.55
TraesCS7A01G308300.1	Wheat	nucleus, plastid	75.41	58.99
HORVU7Hr1G073410.1	Barley	cytosol	75.68	58.82
TraesCS7D01G305100.1	Wheat	nucleus, plastid	75.68	57.73
CDY68274	Canola	cytosol, nucleus	31.35	56.86
TraesCS7A01G089200.1	Wheat	cytoskeleton, cytosol, nucleus, plastid	65.95	53.63
TraesCS7D01G084500.1	Wheat	plastid	65.14	52.97
EES13318	Sorghum	mitochondrion	63.78	52.56
Os08t0137250-01	Rice	cytosol	65.41	51.93
Zm00001d049608_P001	Maize	mitochondrion	63.24	50.76
CDY19610	Canola	cytoskeleton, cytosol, nucleus	40.0	49.66
Bra041121.1-P	Field mustard	cytosol	8.11	42.25
CDY10986	Canola	extracellular	13.51	24.27

Protein Annotations

EntrezGene:100246903	wikigene:100246903	MapMan:12.3.3.1.1.2	Gene3D:2.130.10.10	ProteinID:CBI20511	ProteinID:CBI20511.3
UniProt:E0CT62	EMBL:FN595229	InterPro:G-protein_beta_WD-40_rep	GO:GO:0000003	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654
GO:GO:0005677	GO:GO:0006139	GO:GO:0006349	GO:GO:0006464	GO:GO:0006950	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0009409	GO:GO:0009628	GO:GO:0009791	GO:GO:0009987
GO:GO:0016043	GO:GO:0016571	GO:GO:0019538	GO:GO:0035098	GO:GO:0040029	GO:GO:0043078
GO:GO:2000014	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	EntrezGene:LOC100246903	wikigene:LOC100246903
PFAM:PF00400	PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR10253
PANTHER:PTHR10253:SF5	InterPro:Polycomb_EED	SMART:SM00320	SUPFAM:SSF50978	TIGR:TC60249	UniParc:UPI00015C7E00
ArrayExpress:VIT_19s0014g05210	EnsemblPlantsGene:VIT_19s0014g05210	EnsemblPlants:VIT_19s0014g05210.t01	unigene:Vvi.9046	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat
InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	RefSeq:XP_002282472	RefSeq:XP_002282472.1	:

Description

No Description!

Coordinates

chr19:-:5547699..5561010

Molecular Weight (calculated)

41586.5 Da

IEP (calculated)

6.504

GRAVY (calculated)

-0.091

Length

370 amino acids

Sequence
(BLAST)

001: MAKITLGCEP VVGSLTPSKK RDYRVTNRLQ EGKRPIYAVA FNFIDSRYFN VFATVGGNRV TVYQCLEGGV IAVLQSYIDE DKDESFYTLS WACSIDGIPF
101: LVAGGINGII RIIDTGNEKI HKSFVGHGDS INEIRTQALR PSLVVSASKD ESVRLWNVHT GICILIFSGA GGHRNEVLSV DFHPSDIYRI ASCGMDNTVK
201: IWSMKEFWTY VEKSFTWTDL PSKFPTKYVQ FPVFIASVHS NYVDCNRWLG DFILSKSVDN EIVLWEPKTK EQSPGEGSVD ILQKYPVPEC DIWFIKFSCD
301: FHYNAAAIGN REGKIYVWEL QSSPPVLIAR LSHIQSKSPI RQTAMSFDGS TILSCCEDGT IWRWDAVATP

Best Arabidopsis Sequence Match ( AT3G20740.1 )
(BLAST)

001: MSKITLGNES IVGSLTPSNK KSYKVTNRIQ EGKKPLYAVV FNFLDARFFD VFVTAGGNRI TLYNCLGDGA ISALQSYADE DKEESFYTVS WACGVNGNPY
101: VAAGGVKGII RVIDVNSETI HKSLVGHGDS VNEIRTQPLK PQLVITASKD ESVRLWNVET GICILIFAGA GGHRYEVLSV DFHPSDIYRF ASCGMDTTIK
201: IWSMKEFWTY VEKSFTWTDD PSKFPTKFVQ FPVFTASIHT NYVDCNRWFG DFILSKSVDN EILLWEPQLK ENSPGEGASD VLLRYPVPMC DIWFIKFSCD
301: LHLSSVAIGN QEGKVYVWDL KSCPPVLITK LSHNQSKSVI RQTAMSVDGS TILACCEDGT IWRWDVITK

Arabidopsis Description

FIEPolycomb group protein FERTILIZATION-INDEPENDENT ENDOSPERM [Source:UniProtKB/Swiss-Prot;Acc:Q9LT47]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.